RNA id: XM_021563021.2


Basic Information

Item Value
RNA id XM_021563021.2
length 2774
RNA type mRNA
GC content 0.47
exon number 3
gene id htr5ab
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30395817 ~ 30416375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCACTGTATCTCTTAGACGCTGCTTTCATAAACACTCACGGTAGGTCCACACGAGGAGTAACAAAGTGAACACATGGAAAAGCAAAAGACTGACCGAACTGTCCGTTCTGTTCCCATGTAGGACTCGTTTTTTCTGAGATTTGGGGATGCTTCAAATCAGAAGCTTCCCCTGTGACAGACCTGTCTGAGCTCCGCTGAACACTGCTGAACATGACCCAGCCCAATGTGAGCCTGGTGACTGCCAACCTCAGCGGGGCCTGGGCCAGGGCCGGAAGCGACGACCTAGGGTATGGAGCAGGGAACTTCTATCGTCCGTTCTCAGTGTTCAGCGTGCTAACTCTCACCCTGCTAGCCATGCTGGTGGTGGCCACCTTCGTGTGGAACCTCCTAGTTCTCCTCACCATCCTGAGGGTACGTACCTTCCACCGCGTGCCCCACAACCTGGTGGCCTCCATGGCCATCTCGGACGTGATGGTGGCCGCCCTGGTCATGCCCCTGAGCCTGGTGCACGAGCTCAACGGGAGGCTGTGGAAGCTGGGCCGCGTGCTCTGCCAGGTATGGATCTCCTTCGACGTGCTCTGCTGCACGGCCAGCATCTGGAACGTGACGGCCATCGCCCTGGACCGCTACTGGTCCATCACCAGACACTTGGAGTACACGCTCAAGACCCGCAAGAGGATCTCCAATGTGATGATTGCTCTTACCTGGCTGTTGTCCTCCGTCATCTCCCTGTCGCCGCAGTTCGGCTGGGGGGAGACCTACTCGGAGGAGGGCATGGAGTGCCAGGTGAGCCAGGAGCCCTCCTACACTATCTTCTCCACCTTCGGAGCGTTCTACCTGCCGCTGTGCGTGGTGCTCTTCGTCTACTGGAAGATCTACAAGGCTGCCAAGTTCCGTATCGGCTCGTGCAAAACCAACACCATCACGCCTATGGCTGAGGTGAAGGAAACGTCGCGGCAGCCCCAGATGGTGTTCACAGTGCGCCACGCCACTGTGACCTTCCAGACGGACGGCGACACGTGGCGCGAGCAGAAGGAGAAGAAGGCGGCACTGATGGTGGGCATCCTGATCGGCGTCTTCGTCCTCTGCTGGATCCCCTTCTTCCTCACGGAGCTCATCATCCCGCTGTGCCACTGCGACATCCCGCCCATCTGGAAGAGCATCTTCCTGTGGCTGGGCTACTCCAACTCCTTCTTCAACCCGCTTATCTACACCGCCTTTAACAAGAACTACAACAACGCCCTTAGGAACCTGTTCTCCCGTCAACGCTGAGGCTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAAGACAATGAGGGCTAAAGGACAAAACAGATCATGCCAAATAGCGGTTAAAATCAACGGGTGGCCGTCCAATTGTCTCTGACCACAGAACATTGGCCATCATTTTCTGTTAATTTAAAACTAAGGCTGAGGCTGGGGATAAGGCAGAGGCGGAGAATGGGGCTGTCTTGAAAAAACACACCATCACATGATCAAATTGATGTCACAGGAATGGTGTTGAGGGGGGTAACGTTCCTTAGATACACCATAGACTGAAAACAAAATAAATACGGTTCTCTCATAAACCATAGGACTCAACTACAAACCATggccagctagcacatttggttccttggaagttgtgggaacgtacatttttgttttcccattggttctgggaatgaagccatacgtttcctgactgTTAAAACTGAATGTTTTTTTAAACGTTCTAAGAATGGAAGTGAAAATTTCACCTGTTCTGGGAACttacatttttaggttgcagagaggttctgagaaaaTTTTTCTATTGTTCCCTGAATGTTAAATAACACTGCTAGTttaactccaagcacagatagaacattatttggaaaggcattaatcatgcaaacacatttcttTCTTCTTGTGTCAGTCAGATTCAAACCTATAATCTTCTGCTctttatccatggaattagtccactgcaccaccaggaACAAGCTATTAATTTAAACAGACcctatttcaaaggaaacaagcccTCATTAAGagcaggtgtggccaattagtagGTGTGGCCAACAAACCTGAACAGACTTAACAAGATTTTTGTTGATTGTGAGAAcgggaatgtatatgtttttaaataacattctgagaacgtTCTGGGAACGTTACTaacattttcttgtgtttttttatggaaagttttcttaatgttctgagaacatgactttaaatagaatcatgaggaaacctgtaaaaaacgttatgctgaagtactgacatGTCCACAGAAGAATATTGTTTCTTAAAGTTATCTGAATGTTCTGAGAAGATGACTTttaatagaaccatgaggaaacctgtaggaagcgttatgggaaggttgtatgcaaaataactaggacaaccacgctctcaccaagctctaagaaacatatggttctcagaacgttatgtgcttgCTGGGTATATAATCAACAAACCGTGGACTACATTGTAAAATATGTAGTAGATAACAAACTAGGAACCACATTACAATCCGTGGATTTGGCAACCATCTATTCACTCCGTAGATGTTTAACAACTATTGATTTTCTCTGTGAATAAAACCGATTGTGGTCCACAAACTGAAGTCATCAAGCATTATTGTGATCATCTTGTAACTGACATACACCATATTGAGAAAGTACAGTTTTAGATTGCTGTGTCCAAATAAGATAATACTGTATCAAAATGAAATAAACGGATGAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1461102 lncRNA upstream 370 30395213 ~ 30395447 (+) True G1279449
TU1461045 lncRNA upstream 8728 30386877 ~ 30387089 (+) True G1279404
TU1461036 lncRNA upstream 21548 30374027 ~ 30374269 (+) True G1279395
TU1461020 lncRNA upstream 42921 30350492 ~ 30352896 (+) True G1279379
TU1460984 lncRNA upstream 92937 30302672 ~ 30302880 (+) True G1279348
TU1461152 lncRNA downstream 16814 30433189 ~ 30433524 (+) True G1279498
TU1461155 lncRNA downstream 17509 30433884 ~ 30434118 (+) True G1279501
TU1461158 lncRNA downstream 18297 30434672 ~ 30434922 (+) True G1279504
TU1461171 lncRNA downstream 27109 30443484 ~ 30443712 (+) True G1279517
TU1461174 lncRNA downstream 30502 30446877 ~ 30447153 (+) True G1279520
XM_021563017.2 mRNA upstream 50251 30329810 ~ 30345566 (+) False LOC110489977
XM_021563018.2 mRNA upstream 50251 30329810 ~ 30345566 (+) True LOC110489977
XM_021563014.2 mRNA upstream 419731 29969944 ~ 29976086 (+) True tgif1
XM_021563008.2 mRNA upstream 699866 29689717 ~ 29695951 (+) True LOC110489968
XM_021563004.2 mRNA upstream 730896 29657968 ~ 29664921 (+) True ackr4b
XM_021563023.2 mRNA downstream 65642 30482017 ~ 30496207 (+) True insig1
XM_021563022.2 mRNA downstream 101621 30517996 ~ 30521339 (+) True en2a
XR_005036352.1 mRNA downstream 116721 30533096 ~ 30533257 (+) True LOC118938958
XM_021563024.2 mRNA downstream 138696 30555071 ~ 30601062 (+) False rbm33a
XM_021563026.2 mRNA downstream 138696 30555071 ~ 30601062 (+) False rbm33a
TU1460985 other upstream 92398 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 1580007 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 1771599 28574316 ~ 28624218 (+) False G1277159
TU1458659 other upstream 1771599 28574316 ~ 28624218 (+) True G1277159
TU1458201 other upstream 2139411 28190186 ~ 28256406 (+) True G1276733
TU1461526 other downstream 527796 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 1579792 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 2271183 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 3695432 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 5619208 36035583 ~ 36093396 (+) False G1286648

Expression Profile