RNA id: TU1461104


Basic Information

Item Value
RNA id TU1461104
length 1554
lncRNA type sense_over
GC content 0.40
exon number 2
gene id htr5ab
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30395817 ~ 30416375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGCTCATCATCCCGCTGTGCCACTGCGACATCCCGCCCATCTGGAAGAGCATCTTCCTGTGGCTGGGCTACTCCAACTCCTTCTTCAACCCGCTTATCTACACCGCCTTTAACAAGAACTACAACAACGCCCTTAGGAACCTGTTCTCCCGTCAACGCTGAGGCTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAGGTTGAGGGCTAAAAGACAATGAGGGCTAAAGGACAAAACAGATCATGCCAAATAGCGGTTAAAATCAACGGGTGGCCGTCCAATTGTCTCTGACCACAGAACATTGGCCATCATTTTCTGTTAATTTAAAACTAAGGCTGAGGCTGGGGATAAGGCAGAGGCGGAGAATGGGGCTGTCTTGAAAAAACACACCATCACATGATCAAATTGATGTCACAGGAATGGTGTTGAGGGGGGTAACGTTCCTTAGATACACCATAGACTGAAAACAAAATAAATACGGTTCTCTCATAAACCATAGGACTCAACTACAAACCATggccagctagcacatttggttccttggaagttgtgggaacgtacatttttgttttcccattggttctgggaatgaagccatacgtttcctgactgTTAAAACTGAATGTTTTTTTAAACGTTCTAAGAATGGAAGTGAAAATTTCACCTGTTCTGGGAACttacatttttaggttgcagagaggttctgagaaaaTTTTTCTATTGTTCCCTGAATGTTAAATAACACTGattatttggaaaggcattaatcatgcaaacacatttcttTCTTCTTGTGTCAGTCAGATTCAAACCTATAATCTTCTGCTctttatccatggaattagtccactgcaccaccaggaACAAGCTATTAATTTAAACAGACcctatttcaaaggaaacaagcccTCATTAAGagcaggtgtggccaattagtagGTGTGGCCAACAAACCTGAACAGACTTAACAAGATTTTTGTTGATTGTGAGAAcgggaatgtatatgtttttaaataacattctgagaacgtTCTGGGAACGTTACTaacattttcttgtgtttttttatggaaagttttcttaatgttctgagaacatgactttaaatagaatcatgaggaaacctgtaaaaaacgttatgctgaagtactgacatGTCCACAGAAGAATATTGTTTCTTAAAGTTATCTGAATGTTCTGAGAAGATGACTTttaatagaaccatgaggaaacctgtaggaagcgttatgggaaggttgtatgcaaaataactaggacaaccacgctctcaccaagctctaagaaacatatggttctcagaacgttatgtgcttgCTGGGTATATAATCAACAAACCGTGGACTACATTGTAAAATATGTAGTAGATAACAAACTAGGAACCACATTACAATCCGTGGATTTGGCAACCATCTATTCACTCCGTAGATGTTTAACAACTATTGATTTTCTCTGTGAATAAAACCGATTGTGGTCCACAAACTGAAGTCATCAAGCATTATTGTGATCATCTTGTAACTGACATACA

Function

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1461113 lncRNA upstream 3115 30411366 ~ 30411598 (+) True G1279459
TU1461102 lncRNA upstream 19266 30395213 ~ 30395447 (+) True G1279449
TU1461045 lncRNA upstream 27624 30386877 ~ 30387089 (+) True G1279404
TU1461036 lncRNA upstream 40444 30374027 ~ 30374269 (+) True G1279395
TU1461020 lncRNA upstream 61817 30350492 ~ 30352896 (+) True G1279379
TU1461152 lncRNA downstream 16895 30433189 ~ 30433524 (+) True G1279498
TU1461155 lncRNA downstream 17590 30433884 ~ 30434118 (+) True G1279501
TU1461158 lncRNA downstream 18378 30434672 ~ 30434922 (+) True G1279504
TU1461171 lncRNA downstream 27190 30443484 ~ 30443712 (+) True G1279517
TU1461174 lncRNA downstream 30583 30446877 ~ 30447153 (+) True G1279520
XM_021563017.2 mRNA upstream 69147 30329810 ~ 30345566 (+) False LOC110489977
XM_021563018.2 mRNA upstream 69147 30329810 ~ 30345566 (+) True LOC110489977
XM_021563014.2 mRNA upstream 438627 29969944 ~ 29976086 (+) True tgif1
XM_021563008.2 mRNA upstream 718762 29689717 ~ 29695951 (+) True LOC110489968
XM_021563004.2 mRNA upstream 749792 29657968 ~ 29664921 (+) True ackr4b
XM_021563023.2 mRNA downstream 65723 30482017 ~ 30496207 (+) True insig1
XM_021563022.2 mRNA downstream 101702 30517996 ~ 30521339 (+) True en2a
XR_005036352.1 mRNA downstream 116802 30533096 ~ 30533257 (+) True LOC118938958
XM_021563024.2 mRNA downstream 138777 30555071 ~ 30601062 (+) False rbm33a
XM_021563026.2 mRNA downstream 138777 30555071 ~ 30601062 (+) False rbm33a
TU1461105 other upstream 6696 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 111294 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 1598903 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 1790495 28574316 ~ 28624218 (+) False G1277159
TU1461526 other downstream 527877 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 1579873 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 2271264 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 3695513 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 5619289 36035583 ~ 36093396 (+) False G1286648

Expression Profile