RNA id: XM_021563026.2


Basic Information

Item Value
RNA id XM_021563026.2
length 8650
RNA type mRNA
GC content 0.48
exon number 19
gene id rbm33a
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30555071 ~ 30601062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTTAGGAAGGACATGATTCTATCCCAGAATGCATCAGAACATATTCACTCTGTAATGGTTATGTTCAGATTCTCTGCCGATTGTTGTAAACAACGTTAGCTTGATTTAAACACGAAGGAGTAAACATTTCAATGTATTCTTCAATTATATAGAATTTCGCCTACACTGAGGAAACCGGCTTGCGTGATGGCGGACAGCCCCGGAGATGATGACTTTGAAGATTATGACAAGCCAGGTGCTGAGAGATCACGCAGGAGGAGAGGCGAAGATGATTTAGACAGTGATCTTGAGAGTGATTTGCTGGAGGAGGATTGGCTGACAGCCAAAAAGgATCCCTCAGAAGTGTCAGATGAGGAATTGAACGATGACCTTCTACAAAGCGATGAAGAAGATCAAAACATCGGCCAGGGCGTTAGCCTCAATGCTACTCTTTGCGAATTTGACCAGCAGGTGAACCCCATAGACTACCCAGAAAAAGGAGATATAGGCGATATAGAGGGGGGCTGCCAGCAGGAGGGGGGAGAGTACATGGACGAGTACAGCCTGCCCAATGACATGGAGATACCAGACGGCCAAATGGAATACTCAGGAGAACAGGCTGGGGGCGACGGAGTGTTAGACATTCAAATCAATGAGCCTCTAGACGATGAATTTCAAgcGGATGATTACTCACCAAGCTATGGAGGTGGAGAAAAGCAGGAGGAGCAGGCAGCGCAACAGGAAgccccagaggaggaggaggtctctCAGCTCGCAGACACAGAGGCTGAGAATGAAGCAGAGCCAAAGGAAGaagtgaaggaggaggaagacgaggatGAAGAGGAAGACGACGATGGAGAGTCTGGCCGGTTGCGTTTCAAAACGGAGCGTAAAGATGTCACGTCTGGTGTTGTGCGGCTGGCGGATGCGGGAACCAAAAGACGGAACATTCCTGAAACATTAGAGCTGTCTGAAGAGGCCAAAGCAGGCCTGATGGAGTTTGAGGAGAAGGAGCGCCAGAGGAAGCAGGGCCGCTTTGGAGGCCGAGGAGGAGGATTCAGAGGTCGAGGATTAAGAGGGAGGTTCCCCGGATTTGGGATGGGAGActttggtggaggaagaggacGAATGAATGACCTGAGGCTCCCAATGGTGGCTCTACATATGGGCATGCAGCGGTCTCCCTCGAGAATGACTCCCCCTCACCCACGTCATCATCTTCAGCAGCACCATCGTCAGGGTGGCCCTCGAGGGCCCTCCTTCCAGGAGCACAGCGGCGGGCCGCTGGCCCTAcagcccctcctccccctgcacATGGCCCAACGTGGGGCACCAGTCAGGCCCCAGACGGACCCACCACACCGCATGATGAGTCCCCCTCCCTCACACAACCACCAAcagcaacatgagcagcagccCAAGAACATCCACATCAACCCCCATTTCAGGGGCACTGCATCCTCCCCTGCACAAGTGCCCTTGCTGCCTCCTGCCCAGAGCCAGCCCAGACCTGCTGTGGGTCCTCAGAGGTTCCCTCGACCAGGGGACTTCCAGCAACAGCACGTGCCGGGTAATTTCGGCCAGCCGCCCCAGAGGCCCCCCCATCACATGGAGCCCTGGAGGAACCAGCCTCTCCCCACCCCCCAGGACAGAGAGCCCTTCTTCATCGGGGAGCCAGGGCGGTTCCCAGGGCAGCAGCTGCTCATGTTCGATCACCAGAACCCCGGCTTGCTCATGAACAGTAATAACCACCAGCTCTCCAGCCAGGGCCACATGGCCTTCAACCAGCCAAGCCCAGGGGGGTTCAACCAGCCAGGCCAGGGTCCAGGGGGCCAGCTAGGGATGTTCCAGAGAGAGCCCCCCAGACCTAACCTGCCTCCCCAGGGCCACCCCCAGAGCCACCAAGGCATGGCCAGCCTGACTGGACACAGCGGACCCACTAACACCAGGCTCTTCATGGGCCACCGTCAGCCCGGCTTCCCCCAGCAGCAGGGGACTCCCGGGCCGTTCCCTTCACAGCAGCTCCAGTTTGGGATGCAGGGCTTGATGCAGCACGGCCTTCTCCACTCGCAGCTCCAGCATCATGACTTGCCTCTATCCCAtcagcaacaacaacatcagCAGCACCACAGACAGGACCTGTCTCAGCCGCCTCTCCAGCACCACTCTCACCCCCATCCCAACGAGCAGCGGCAAGGCCCCATGATGCACCGCGGCGGGCAGGGCCAGCCCCCCTTCCAccagcagcagctgcagcagcACGGCAGCCCCAGACAGATGCACCCTAGCGGGCCCCGCCCCCAGAACTTCCAGCAGCGTAACGCCCCCATCAGGACGAGGATGAGCCCCCCTGCCCCCAAACTCATTCCCCAGCGCAACAGCAACCTCCGCGAGCTCCCCGTGGCACCTGGCAACCAAAACGCGAACAACGTCCGCCCCGCCTCTGCGCCAAACGCCTCCAACGTCAGGCCCGTTGCCAGGGCAATGCAAGGAGGGGCGCGACCGGGCCTGAACCCTCGGCCGGTACCCGGCGGTGGCAGAGGAAGAGCCCAGCCTGCTGCTGCCAACAAGGCTGCAGCACAGCTACCTGGGCCACTTGGAAGAACGGTGGTTCGCAGGGATTCCACAAGCACCCGGCCAAACACAGCAGTACAGGATCCGGACGAGGACGAGGAGACGCGGCAGTACCGTCTGAAGATCGAGGAGCAGAAGCGTCTCCGGGAAGAGATCCTGAAGAGGAAGGAGATGAGGAGGCAGATGCAGGCCAGCGTCCGCAAGAAGGAGCTACTGGAACGCATCAACGGCCAGGGTgacccacaacaacaacagctgcaacaccaccaacaacaactgcAGCGTCCGTTTCCTCCTAAACCGCAACAGCCCCAGCAAGGCACTTCTGCTTTCCCTCCCAGCGGCACCCCACAGACGCCCCCCGCACTCCGCCAGAACGTCAAGACCCAACTGACCAAGGGTGAGCAAGCACCGGCTCCAGGCTGGCAGGGCGGCAACACTGGCCCCGGGTGCCCTGGTCCCAACCCTCACCAGCAGGCCCAGTGGCAACAGCAACACGGGCAGCAGAGAAGGAACGTTACCCAGCTGAACCCTATCAGACCAGGTGGGGCCCCTCCCATGGGGAACATGCCCATTCAGGGAGACCCGATGGCGGGTCTGGGTTCCGGCCAGGCCCAGTCTCTGGGGCCTAAATCAGGGGTGAAGAGAACTGTGATGCAGCGAGCCAACAGTGGAGACGGAGCGGGGCCACAAGTTCCACAGAAAGTAAGAGTGGTCAAGCTTCTAGGAGGGGGAGGAGATGTGAGTGGTGCCAGCGCCCCAATCCAGCAGCAGGCCGCTAGGCCAGCCCCCCAGCTCCACCAGGGCCCAGTGAGGAAGGTAACCCTGGCCAGCCCCCCCGGAGGACTGCCCATACAGGGCCTGGTCACACAGGGGGGCAGAGGGGGCATGGGCAACAGGGTGGTTGTCCCGGGGTGTGGCAGAGCCAGCGGGGCCGCGGGAGGGACAGGTCAGCTGGGCCGGGGGCGCCTGATTCCTaccagacagagccagagaggggCAGAGGACAGCCAGGCCTGCACTGTGTCCATAGACGGCCTCTCCACATCCACCACCGACGCGCAGCTCCGGAACTTGCTCAACTCAATCGGCCCCATCCAGATGTTCAAAATGCTGCCCCAGCAGAGGAAAGCCATTGCCAAATTTCACAATCCCCAGCATGCCTTGAGTTTCCAAGTCAGCTTCAACAGGCATATGATAGATTTGTCCCATATTGATGTGTCACTGATTGATGTCTGAAGCCGCGCGGTAGAGGGTGGCGGCGAATGCCCAGTGCAGGACGTCACGCCTGACGCTCATGTGGCTTGGAGGTTCCGGTGTACAGATCCTTCAGCTATATGTAACAACAGCTCTATGGAACACACAGAACCTACACAGCACCCTCATCCTCCTCACAACAAGCACCCCCGACCTCCTTGCCTGCTGACGGATCTACTGAGGAAAACGTCAACACAAAGCAGCATGTTTTGCTCATGTTTGAATTTCCGTAAAGGGGAGCTTCAAATGCCGGTTTCATATGACAAATATGTTTATTGTCACTGGTCTGGACACTTGGACAGACGTGACTAGAGGGAAGATGCTGGATAGTCTGTGATTTTTCAAACTTTGACAGAAGGAATTTGAGATGAGTAAAAGGTTTGTGCATCGGGCACTAACGACAACAAGAAGTAGTGGTTGACACTGGATAATGGTTGCTCCCCACCCTCAGCTCAGTTGTGAACACCATCTATATCAACGATTAGGGAAAAGAGTTTAGGAGATTTAACTTGTACCTGGAGATTTTACACATTTTCTGAACAGGTGTTTTTGATTCGAGGCAAGCTGCTGATGTAGGTCTTGACTGAAAGAAACGGGTGTAGAATAGGTGCGAAGCTTGCCACTACATATTTTCCTTTCTGGCAGTGCCATTTTCCTTCTACAAATGGCAGCATTTCATAATTATTGTGGATTGGATGCGATGGGTTGACTTTTTGGGGTAGAGCCCTTCCTCAAGTAGTGTTTCATTCCTGAGTAAATGGCACAGCCTAGTGGAGAATTTaagccatttaaaaaatataatctGGTTTGAGGGTATGATTATGGGGATTCAAACTTGACCTTGCATCAGCTAACGATTCCAAGGATTTTTATTCAAATAGAATTTAGATTGATTAGCCATGCAAATATAGGACGTTCTTAACCTATTCCTAACAGAATTTCACAGTTCTGTTAAAGAAAGCCCTTTTGACTGGCCACCATGTCTTCACCTTCACTTCTGGAGGAATACTAGGCTGGATGACATGGATAAATAGTGTGTATTTGTTAGGTTTTCTCTACATTTTAAGGTCATTGACGTTACGCGGAAAGACTGGTTAAATTGTCCTTATGATGCTAGTGTGTCCATTTTGACCGTTTAGCGTTACTTGATCATTGGAAAAATGTGTACTTTAATAGGGAGCCGTTAGTTTTGTCTTTTAACTGGGTAAACATGAATAGGGTGTCTACGCTTGTGTGTTCTCGGAATCCGTTTTAGTCTTTATTGACATTTTTGGGATGCACTCAACTTTAGTTTTGTGTATCGTTGGCATATTCTGATTTCATTGGTACATGTCAGGTTTAGTGGGTGTGTTCGCTCCATAGTAAATTGTCATTCCAGTTCCATTTTAAAGGTTTATCAGTGTTTCCCTTAGAATTTGTTTTAGCAGTGGTGGCAACTGTCACTGAAGGTGGGGGTTGGGGGTCAGGCAAGGATCATAAAGGGGTTTATCTGGTGTTCGTGTTGGAGGGGTGTGGTAATTGGCGTGGTCAGCCCGTTGGCGCAGCTTAATTCGATCCAGAATTGTCGGCGGAGAGACAAATTTGCTGTTTCTCAGCAAaatgtcctgcaattctatgTATCGCTTTTTGCCTTGGCTGTGTTATGCTCACACATTATAACAAAAGCAAAGGGTACCCCAATCTGGGCCCCTGGGTATGTGCCCGGTCAGTAAACCAGCCAGGCTAAAAATACTCATAAATTCATAGGACGACTCAAAAATGTACAATATTaactgtctagcttttattttttttCGATTTCtagttctcaaagattatatTATTAAATAATATATTTCAATTATCATTTCTAAGTACTTTGTCTGGTTTTTGTCATTTAagtttacacaaaaaaaaaaaataataatcatatAGAACTCTAACCTGAGCTAGAACTCTTACTTTCGTTTAATAGTAAACTAGTTTGACTCAATAGTAAAACCAAGGATACTGGTTTGTGCTTTTTGCATTAGGCCACAATTCAGAATGTTGTAGCAGTCTTGCCAATCTGTTTTTGTTTTAGAATTTTGATTAGAACACCAAACCGCAAAAGGAAATGTCATACTTGTTTTTTTACTTTCAAAAAACTCATTTACAAACTCATTCTATACTGAGTGCATTCATACATACATCATTTTTAAAAAATAGTTATTTGTTAATGATGGATTGCAGGTTCACTGAAACCTGGTGCAACAAATGCATATTTGTGTCAAAGTACCTTTCAGTATTGCTGGATCAAGGCTCGGttaggtttttattttattttgcttcCAAAAGtgaccaacctcctataataagAGATCAGAATAAAACAGTTGCGGTATAATTTCATTATTTAGTATAATTTAGCGCAGTACCTGTTCCATTTGGGAATGTGTGGGGGCAACCATTGTCAGTGTATTAGTAGTCATGAACATAACATCAAACAATTATAACTGTCACTGAATGTTTATCACTTTTCCAAACTTTTTGAGTTCTCATTATGTGCTTTGTTGTATCAAGttaacctttttttatttttataaatatatatctatatatctagatatagatgtgtgtgtgtccagactttCATTATTCTACAAGTGTTTCATTTGTATGTAGAACAAAAACTTGAGAGCCTGGACCCTGTTTCTGTTTGTCGATATTTGAAGACGTTTTAAAGGGAAAATAAAATATGGCCTATATATACCATGAAAATATGGTTATGTGAAGCCGATTGAACTATTCTAGCCCACAACTTTGTGTGTCTGATGTCTATTTGTCGTTACGGTGAGGTAGCTCATTTCGGATGCCAGCTGTCCTTCATTGTAATCAAATATTTTTCTTACGGTATTGGTTAGTTTTTATCCTCCCTGGTTATTGTCTCTTCCAGTATACTGACTCCCCTCCCTGTGCTGTTTTACCAAATCCTTGAACAATTTCCTGTTGCACAATTCAACTTGGGAACTAGGTGTATCAGTAAGATTAGGTAACTTGTGGTTTTGAATGTAGGCTACATAGTTTGAATGTAGGCTACATCGTTCGAATGTAGGCTACATCGTTCCATTACATGCTAATTGGGTACAATCTGCCATTATTTCTGGCAATGAATCTTCATTTTATTTGTTGTTAAGTATTTGAGTATCTTTATTCAAAGTTTATGAGTGTATATATTCATAGTTTACATTTAAttacccccatcctccccaacacACAGCACTGATAATTCATTATTTGAGATGCCATAGTATTAGCTGTCAGCATAAGGAGCAGAGGATGTGTTACCTAGCGGTTTCCTGTACTCCTTGTAAGTCGTAAAGGGCAACATGTTACAATTGAGTACAATTTTAAAGTtatttttgatttttttgtcACTTCCCGTTTTGGGCTTTCTCTGActactgactgaggttttattttgttttgtagaTGTTTGAACTGGCCGCTTCTTTGCACgttgttcaatgttttttttgtgctgaatttAAATTAGAATCCTATGGATTTGAAAAGTATTGGCAATGCCATTTTAAGTCGCATTAGTAAAAGACATTAATGTTATGTCTTGTAACAGAGAACCAGGTTCATATTGGACCTATTTTTGTACCTTGTTTCTAAGGTGTTTATTGCCGTTGTACTTACGTGTACTGTATGATGAACGTTGTGCTTTTTGTGTCATCAGGTTTGGAGCACTCCACTTTAGCTGTTTTAATGTTGATGATTTTTTGGGGAAGCTGCATTAATTTAGGTTTTAAACAGGATGCTACATCTACTGATTTGACTGATCTGCTCACATCGAATTGTTTGCTATTGCTTATTTCATTTTAAATGTCAATGGTTTTCTAAGATGCAACTACTGGACATGCTGCTTAAAATGTTATCGTGGCCGTTGGGATGAAGAAGTGCCTGACGTTTAAAAGATCTCCGAACTTTGAAACTACTAACGTTTCTTATTCTTCACTTAGGTGTATTGGATGGGCTCCAGAAGcgcattgttgttgttttttttgcaggACCACGGCTGAATATCCATAGTTGACTCCTTtcctcttttcttttcttttttaggTGTGATCCCGTGGACTGGCACCTTGCCTCAATGCTAACACGGTTTGGTTGTTTGCAGGTCCTGTGAGAACACGATTGACTACTTTTTCCTCTTGATAATTCAGTTGATTTTGCAGCATGGTTTTGGGCCTCAAACCCCCTTGGCTGGACTTACGCTTCTTCCATCAACCCCTTTTCCTGTAACCCTATCCTCCCAACCTCCAAGGTTGGCATTGACTCAGTTGAGGTGTGTTGTTATTGTGGTTGTTGCTGCTCTTAACCCTCTGTATCAAGCAGGGGCCCTGTCTGGATTACCTTTGTTTGTTAGCCCAATGGATGGAGGTTAACATCTCTGTGACGACACCCGGGTTCACAGATCAGACACGCTTAAAGCCACACGCTTCCACTCCACCCAAGTCATGCCAGCTATGCTCGGCATTCAAATGTTTGTTTGGATCATAAAAAAGAGACCACTGATTTGTTATACCGTGGACGGTGTGATATTGTCACTGAAAAAACTGACTTGAATTGTTGAAAATATACCAAAATGTATGTTTCACATTTGTGTTGAAAGAAATGTTGATCAATCAAGATTATACAAACCAACATTGTTCAAGAATTTCAGTGTTTGTGAAATGTTTGCTTGAGGTGCCTTTGTAAACTGAGATGCAACATGTTGAAATATGCTTTTATTTTTACAAAATATACAATGTGCATTGTTGAATAATTAAGTGATTCCATACCTAAATAAACACCAATGTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1461260 lncRNA upstream 37466 30517389 ~ 30517605 (+) True G1279605
TU1461195 lncRNA upstream 61334 30490585 ~ 30493737 (+) True G1279541
TU1461189 lncRNA upstream 84725 30470111 ~ 30470346 (+) True G1279535
TU1461179 lncRNA upstream 99007 30455863 ~ 30456064 (+) True G1279525
TU1461174 lncRNA upstream 107918 30446877 ~ 30447153 (+) True G1279520
TU1461409 lncRNA downstream 123804 30724866 ~ 30725172 (+) True rnf32
TU1461469 lncRNA downstream 202741 30803803 ~ 30804010 (+) True G1279793
TU1461434 lncRNA downstream 220859 30821921 ~ 30822371 (+) True G1279758
TU1461482 lncRNA downstream 227565 30828627 ~ 30828827 (+) True G1279805
TU1461483 lncRNA downstream 230604 30831666 ~ 30831998 (+) True G1279806
XR_005036352.1 mRNA upstream 21814 30533096 ~ 30533257 (+) True LOC118938958
XM_021563022.2 mRNA upstream 33732 30517996 ~ 30521339 (+) True en2a
XM_021563023.2 mRNA upstream 58864 30482017 ~ 30496207 (+) True insig1
XM_021563020.2 mRNA upstream 138696 30395817 ~ 30416375 (+) False htr5ab
XM_021563036.2 mRNA downstream 113650 30714712 ~ 30725178 (+) False rnf32
XM_021563034.2 mRNA downstream 113655 30714717 ~ 30725178 (+) False rnf32
XM_021563039.2 mRNA downstream 182861 30783923 ~ 30791701 (+) True nom1
XM_021563041.2 mRNA downstream 208906 30809968 ~ 30857952 (+) True ube3c
XM_021563050.2 mRNA downstream 265916 30866978 ~ 30902062 (+) False dnajb6b
TU1461105 other upstream 147054 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 251652 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 1739261 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 1930853 28574316 ~ 28624218 (+) False G1277159
TU1461526 other downstream 343109 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 1395105 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 2086496 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 3510745 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 5434521 36035583 ~ 36093396 (+) False G1286648

Expression Profile