RNA id: XM_021563047.2


Basic Information

Item Value
RNA id XM_021563047.2
length 2560
RNA type mRNA
GC content 0.46
exon number 10
gene id dnajb6b
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 30866978 ~ 30914115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAATGCAGGAAGTGACAGTTGTTCACATGTGCGCAGAGCGCATCAATTGCACAGCTCCTATTGGCATACGGGTGTTTTACAGTCACGAGACTATCCATGTATATATGACATCTGAGAAAGCGTTGCTCTGTTCAAACACTGATGAGGTACCACAAGCACGAGCAGAATATCCGTAGACGCAGTTTCCAACTATAGACGGATCGCTAAAAACAAAACCTAGTTCATTGGAATTCACATAGGTCAGTAAACGAAGGCACTGACACATCTCTTCAGCTGGGGTGGAAGAGAGACGGCTGAAGACTGCTGTCTAGAAGAAGGAACCAGAGAAAAACAGCCATGACAGAATACTACCAGATTTTAGGGGTCCAGAGAAACGCTTCGGCCGAGGACATTAAAAAAGCGTACAGAAAGCTAGCACTAAAGTGGCATCCAGACAAGAACCCAGACAACAAGGAAGATGCAGAGAGGAAGTTCAAAGAGCTTTCAGAAGCCTATGAGGTCCTGTCAGACGCAAACAAGAAGAACCAGTATGACCGGTATGGTAAAGAAGGCTTGGCTGGAAACGGAGGCAGAGGAGGGCATTATCACAACGGTGATCCCTTCAGTGGTGGGTTCACATTCCGTAACCCCGAGGATGTCTTCAGGGAATTCTTCGGAGGTCGAGATCCATTTGCCGATTTCTTTGCAGACGATGACTTCTTCGGTGGGGGACACAGGCAGCGGGTGGTGAACCAAAGTAGGACCGGAGGATCCTTCTTCCATGGATTTGGTGGCTTCCCCCCCTTCGGGGCGGGCTTCCCAGGGTTTGGTTCAGGTTTCACCTCCCTGGGACATATGGGTGGAGGAGGCTTCGCCTCGTTTTCCTCTTCATCTTtcggaggtggaggaggaatgtgCTCCCGCTCGGTGTCTACCTCCACCAAGTTCATTAACGGAAGACAAATCACCACAAAACGGATTGTGGAGAACGGCCAGGagagggtggaggtggaggaagacggtCAGTTAAAGTCTCTAACCGTCAACGGTCTGGAAGATGACAACCGGCAGCAGAACACCCTCCTTGGTCTCCCCTCCCACCAACGCTTCCTGAGGAATAGCCCACAGAACCCCCCAGAGGAAGACGAAGAGCGCGGCCAACAGAGCCTGGGACTCGCCAGAGGACACATGGACACCAAGAGGAAGAAATATCCTTGGAGGCAGGAGGCGGAGCTCAAAAAGAAGAGAACACCTCGATTGGCTCCTCGAATCGGTGCCTGGTTCTAAAGCACCACCTTGGCTCCGCCCTTCCCTGTACGTGTCATCTGGAGGGGAAGAACATCAGTAGATTAACACAACTCAGCCGTAGGGTTGCCAAATTCAGGTTACTCTTCCAAAGATTCCAGATTTTGTGGAAATCTCAGTTGGACGATTCCCAGAATcaagagggaataagcaggaaatccggaTCCTCCAACCACAGgttttctggaaaacctgggaattttgggaaagttacagGAATTTTTCAAACCATGCCAGCCCACCACCAGCCCACCACTGTGCCAGGTCTCCCCTTGTCTATCAACTTCTCAGTGCAAACAGCAAATCTCATTAGCCATCTTCTATGCAAGACATTAGACTTTGTCAAGGTCTGTTTTCTGTCCTCATGGCTCTGCTGTGTTCTCTACGCAGTTCAACTTTCATTACCAGTAGAACTGCCAGTAGAGGCcatagtttatttatttttgaagatgtcagtagagaggagaaattctgtttttttctggattttgcATTCCTCACAAATGGTAGGACCGGAGGACCTTAGCATGAGCATGTGCACATTCGGTCATAATTTGTCCCCTCTGAATGGAAgtatacatttttcctcaaatgCAATCATCAGTAGCTACATCCATTTTTGctcttataaatgaatgatatgtccacattgattcttgaagaatataatttataaatgcctcatgagcttagttcaactgttgtaccccatcagaagcGAAAGTAtatgggctctattcaatctacATCGTGGAAGTTGAGCATCACAGCATGATTtgacattttaaaggcaatgttcccgctttcgcagagactgcattcacggtaaactgCTGCATAtgtgtcggctcaatcggaaatcacctttacatttctatcgcGGAATCTGCAACACTTCAGctttacagattgaatagagccctaagcttgtttaactccaatgtttgtaaacaaagtaaatgtaaacaaacactacgTAGCCTCAAAACGTGGTTAAAAATAGTGTTGCTATCAAGGCTGTTCAATCCTTGCGTTCATAGAtcagtctatgaatttgagagtggttacatttctccagccccatccatcagctttttaccaaaacaggtgCGGGGTAgtggctttgttattgtttctactgctaaTTGCCACTTTTTAAAGGGATGTGATGTAGCAGAGTAAATGTAATGGATGTGAATGGTCTGGAAGAGCCTGTAACAGGAATCTAAGTGATGATGCCAGAGACTCTGAAGGAAATAAAGGTATAGGGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1461486 lncRNA upstream 31516 30835047 ~ 30835462 (+) True G1279809
TU1461483 lncRNA upstream 34980 30831666 ~ 30831998 (+) True G1279806
TU1461482 lncRNA upstream 38151 30828627 ~ 30828827 (+) True G1279805
TU1461434 lncRNA upstream 44607 30821921 ~ 30822371 (+) True G1279758
TU1461469 lncRNA upstream 62968 30803803 ~ 30804010 (+) True G1279793
TU1461658 lncRNA downstream 161176 31075291 ~ 31127396 (+) True G1279958
TU1461661 lncRNA downstream 161954 31076069 ~ 31077550 (+) True G1279960
TU1461668 lncRNA downstream 170315 31084430 ~ 31132153 (+) True G1279966
TU1461764 lncRNA downstream 297226 31211341 ~ 31214897 (+) True G1280062
TU1461787 lncRNA downstream 323559 31237674 ~ 31238866 (+) True G1280080
XM_021563041.2 mRNA upstream 9026 30809968 ~ 30857952 (+) True ube3c
XM_021563039.2 mRNA upstream 75277 30783923 ~ 30791701 (+) True nom1
XM_021563036.2 mRNA upstream 141800 30714712 ~ 30725178 (+) False rnf32
XM_021563034.2 mRNA upstream 141800 30714717 ~ 30725178 (+) False rnf32
XM_021563031.2 mRNA upstream 265916 30555893 ~ 30601062 (+) True rbm33a
XM_021563069.2 mRNA downstream 375084 31289199 ~ 31306437 (+) False dync2i1
XM_036944290.1 mRNA downstream 375229 31289344 ~ 31306437 (+) False dync2i1
XM_021563066.2 mRNA downstream 375642 31289757 ~ 31306437 (+) False dync2i1
XM_021563064.2 mRNA downstream 375648 31289763 ~ 31306437 (+) False dync2i1
XM_021563067.2 mRNA downstream 375648 31289763 ~ 31306437 (+) False dync2i1
TU1461105 other upstream 458961 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 563559 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 2051168 28815366 ~ 28815810 (+) True G1277279
TU1458658 other upstream 2242760 28574316 ~ 28624218 (+) False G1277159
TU1461526 other downstream 30056 30944171 ~ 30947330 (+) True G1279833
TU1463280 other downstream 1082052 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 1773443 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 3197692 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 5121468 36035583 ~ 36093396 (+) False G1286648

Expression Profile