RNA id: XM_021563067.2


Basic Information

Item Value
RNA id XM_021563067.2
length 4381
RNA type mRNA
GC content 0.47
exon number 23
gene id dync2i1
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31289199 ~ 31306437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGAAAATGAAACCATAAATACCAGATTAAAAACGCCATGTGCTGGCCTTTGCTTTGTTCGGGCCAGACAATTTCATAAGAGCAGAAACTGACTAGCACCCGGGCTACACTAAATAAAGCATATTCAtgcagtttttaatttgttttaatCTGAATGATGATTATATGGCTTTACACAGACTTGCCAATATAATGGAATTTAGTCATTGTCGAGCAGGGTCTGGACTTGCCATGATAAATAGATGCATCTGCTATTGATATATTTGGACTGTGTATCCATGGCGATAAGTTCTTTGCGTCCAGAGAGCTCTTCGATCGGTTGACAATCCTGTTGTCAAGAGAACATGACGCACTCGCCTTAGTTTCAGTCAAGTGCGCTTGCGCAATCGAAATCTGGTGTCAAGGCGCTGAATAATGTCAACACAAATTCGTAATCTTTATTTCTGATATAAGTTGAATATTTCATGAGGAAGAGACAGGCGATATCATGCCTACAGATAAGAAAATAACAAAGGAAGATACATGGAAATCAGATGACCTTAGGAGGCACATAAGGGGTGGAGGACACGATGAAGAATCTAGCGGCagcaggaggagagatgatgagagaagaCACAGGACGGGGGAGTCAGTCGAGCGACGCCACAGAGACCCAGAGAGGGAGgccagaagggagagagagaagaacagagagagagatgggacccGAGAGAGAACAAAACCCAGAGATACAGACAAGGACAGGCATCAAGACAGAAGGAAAGACGACTCGAGAGACAGGATGGGCGAAAAGGAGGAGCGAGACAAAGAAAGGAGCAGAGCGCAAGATAGGGTTATTAAAGGCACAGAGAATGTTAAGTACAGGAATGGGGACAGAGACAGTCGGGACAAAATGCATGatagaaaagaaaaagaaaacagggatagggagagggtaAAGGCCAGAGAAAGGGATACGGAGAGGacaagggagagggaaagagatgagcTGAGGAAGAGCGACAGGGataaagagaaggagaaaaacaAGGAGAGTGAAacaggagaaagggacagggagcgaAAGTctgacagagatagaaagagaaatgaggagagggcggagggaggtagagacagggatagagagcaTGATCGTGAGAAGAGAGATAGACATAAGGAGAGGGAGTATCTGAAAGAGACTGAACGCTACAAGGACAGATCACAGAAAGAcaaggaaagaaaagaaagacacACGGACAAAGAGCATTCAGGACAAAAGGAAGAAAGAGaaTACAGGGAGCAACATAGaaaagaaaaggaggagagagaaaggagacacaaagagagagcacAACACGATACAGGTGAAAGTCGGAGACATGACGGTGAATCCAGAGAAGTGGAGAGTGAGCGAGTGCACAGGGAACGAAAGGGatcggacagagagagggagggaaagagggataaaCATAGAGAGAGGAGGCACAGAGAAGAAGCAGGTCCTGAGAGGGATCCCACAGAACGGACCAGTGCCAAgaaatcatcatcatcctcagaCCTCAGAGTTCACAAGGATAAGACAGAGCCTGTTAAAACTAAGGTGGAAATCGCGGAGGCCCCGGCTGAGGACTGTGGCTATGATGAAGCCCAGGACTATGAAGAGGACTTTGAGAAAATGGATTATGAGGAGGATTTTGAGGATGTGGATGACAGCGAGGGAGAGGATGAAAAGCAGACACGCAGCCATGAAGAGAGAGAAGCGAGGGAGGAAATTAGttcacagaggagggaggagatcgAGGCCATTCAGAGAGCCATGGATGAGGAGAACGAGAGAGTGGGCTCTGCCCAGCCCAGGCTAAGCACAGAGGAGGACGACAGACCCAAAAGGTCAAGAGATTCTGAAACGCCTCAAAGTAAAGTTTCACAGCACGGGAGGTTCATGGACTTTGTCGCTGCGAAGCATCGTGAGGTCAGCAAAAAGGTTGCCAGCAAACAGAAGAAACGCAGTACAGAGCTGCTTCGCCTGATCGACCTGGACTACTCCATCACCTTCTCCCTCCTGGATCTGCCCCCTGTCAATGAATATGACATGTACATCAAAAACTTTGGAACAACAAACACAAAACAGGCTTACGTCCAGTGCAACGAGGACAATACTGATCGCGACATTCAAACGGAGGAGATCGAGATGAGCGAGAAGTGGACACAGCATCCTGCGGAGAGGAACGTATGCTGTGGAGGTCCTAAACTTTCCCACGAGGCGTCTGATGAATCTGTGACCAAACTGAGCATCGATTCACAGCGCCTAGCAACATTTCTGCGCTCAGCTTCACAGGTGGTTGCGGTACTGTTGGAAGAGGATAGGGCTGAGAAGCAATCACTGAAGAAGCTGAGGACTCAAGCAGACACTCTCTCTTTCAGCGACGGGTGTTTACAGCTCAATACGAAGCTTCCATTTCTATATGGTCGTCAGATCAGCCTGGTTCAATTCTCCCAGGTGCAGAGGCAGACCATGCTGTCCGTGCACAACCCCTCAGCCAAGCCCAGCGCCGTGCGGCTCGACAGCAAGACCATCATCTGTATCTGGAACATCTGGGAGCCCTCCCGTCCACAGAAGATTCTTGTCTACGAGTCCGAGGTGCAATGCTGCTGCTTCAGCCCTGGTAAAGCCACGCTGGTGTTTGCGGGCACGTCCGTGGGTTCTGTAGTCTTGTGGGACTTGAGGGAGCACGCCAGTGCCCATTACACTTTGAGAATAGGGGAGAACGACTGGACTCTCCGCCACCCAACCTTCTCCACAGATGCCGTGCTGGCAGCGTCGGGCCACATGTCCTCAGTGAGCTCTGTGGAGGCCGTCCCTGCCACCGTGGCTGAGGGCCTGAGGCCAGAGCTTCCCCTTTTGGCTTCTGACGAAGAGTCATCAGGATTGTCATTCCAGTTGGCTTCTCTTGATGGAAATGGGGTTCTGAATCTATGGGTGGTACTGGAGCTCCCTAAAGCCAACGACGCCGGCTCGCACACCGACCTGGGGCTCCGGCCTGGGGGCAAAGTGAAACTGCTCCACAGCTCCACAGTCCTCACCACCAGCGAGAGgtCTTCGACGCGAGACGCTAAGAaaacaacactgttacagacacTGCTGTTAAAATTTCTGCCTTCTGATTCCAACCATTTTTTCATTGGCACAAATATGGGTCTTGTGAACCATGGGACCAGTCACGGGTTAAAGGCTCCTCCAAAGTTCTACAGGCCTCAGGTGGTTGGATTCAGACCCGTTGATGTCGCCTCCATCGACTTTTCTCCCTTCGGAGAACCCATATTCCTGGTGGGCTGTGGGGATGGCAGTGTCAGACTACACACAGTGCTGAGTGAGCAGCCTCTGATGGAGTGGACCAGCAGTACAGCAGGGCAGCCGGTGGTGTCAGTACAGTGGGCCCAGACCAGGCCAACAGTCTTCTGTGTTCTGGATGCTGCCTCCTGCCTTCACATATGGGACCTGCTGGAGAAAGACTTTGAGCCTGTGATCACTGAAAAGATTGATGCTGACAGGGTAACAGCCATGGCTGTTTTTGGTGACCCTGCAAAGCAGAACACCTATTCAGGAATATCATTGGCAACACAGTCAGGGAAGATAGAAATGCAGTATTTCAGCAAGAGATTGACAGTGCCTGAATCTGCTGACCTGGAGAAACTACAGATCATGATGCAGGAGGCCTTTTGAAGTTATATGTCAGGAGTGTATTCATTTGTGCAAACTGTttaaaactttttatttttttactgaaaCTTTTTGCAATGAGTCATAGGGAGTCATAACATATCACtaatgtttcttattggacaaattcagttagTCCCTccccgtttgcttccgtttggcTCCTAGTGGATACAACCCAGGGGGCTCACTGTGTTGAATCAAATGTGTTCATGCAGTGGTAATCGCAGTCATCTCTAGATCAGTAAAGAGATCAACTTCAGAATGTAAGCAGATATAAATGGACTATATATTTCTATTACATTCCACATTCAGTTATTTTGTGTATTTGTTATTCTAAATACAGTAGATGCCATAGTGGCATAATACAGTATTGGAATAAAAATAGCTTTGTTTGTGCTTATTTACAAATGAACAACTTTTGCATTTGCATACCGACAATGtctgttctgtgtgttttatagaaaataaaaaaaatggactTGGTGTATTCTTCCCATCCAAATTACTCAAAGTGTGACACCAAACATTCAGGGCTAAGCAACATGATGAATGTATAGATGCTACTTTTCATTTTATTGATGTGATGTTAATACAATAACAGTATTTTCTCTATGAGAGAACTATAATTtttcaagattttttttttacttcattaAATAAAGTATTTCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1461787 lncRNA upstream 50897 31237674 ~ 31238866 (+) True G1280080
TU1461764 lncRNA upstream 74866 31211341 ~ 31214897 (+) True G1280062
TU1461668 lncRNA upstream 157610 31084430 ~ 31132153 (+) True G1279966
TU1461658 lncRNA upstream 162367 31075291 ~ 31127396 (+) True G1279958
TU1462412 lncRNA downstream 61122 31367559 ~ 31373233 (+) True G1280642
TU1462415 lncRNA downstream 65117 31371554 ~ 31372376 (+) True G1280645
TU1462436 lncRNA downstream 90607 31397044 ~ 31397294 (+) True G1280663
TU1462441 lncRNA downstream 102902 31409339 ~ 31409552 (+) True G1280668
TU1462454 lncRNA downstream 120634 31427071 ~ 31427560 (+) True G1280681
XM_021563042.2 mRNA upstream 375648 30866978 ~ 30914115 (+) False dnajb6b
XM_036944292.1 mRNA downstream 209 31306646 ~ 31332697 (+) True wdr97
XM_036944298.1 mRNA downstream 135057 31441494 ~ 31447498 (+) True nrn1a
XM_036944299.1 mRNA downstream 452289 31758726 ~ 31792146 (+) True LOC110490003
XM_021563083.2 mRNA downstream 604349 31910786 ~ 31924479 (+) True LOC110490007
XM_021563084.2 mRNA downstream 656398 31962835 ~ 31974011 (+) True inhbaa
TU1461526 other upstream 342433 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 881746 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 986344 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 2473953 28815366 ~ 28815810 (+) True G1277279
TU1458659 other upstream 2665545 28574316 ~ 28624218 (+) True G1277159
TU1463280 other downstream 689730 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 1381121 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 2805370 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 4729146 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 5202641 36509078 ~ 36510512 (+) True G1287489

Expression Profile