RNA id: XM_036944298.1


Basic Information

Item Value
RNA id XM_036944298.1
length 1969
RNA type mRNA
GC content 0.40
exon number 3
gene id nrn1a
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31441494 ~ 31447498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAAGGGGGAGTCCAACAGTCACCTTTACGTCAAGCATGCGATGTGGGCGTGAAGCAGagcgagagatggggagaaagtgAAAAAAAGAGCCATCACCGCCCTCGCTTTACAAGGGGTGCACCATTTCACTCCTCTTCGCCACACTGTGAGTGTAACAGGCAACGGGAGAAAAAGCAAGAGTCTGTGAATGCTGCTGGAAGTTGATGGCTATGTGTGATGCCCAGACCTCAACATCGTTTTTCCTTCCAAGTTTTTAAGATCTGCATACGCCAATGGTTTTACCACACGTAGAATGGGATTAACTTGGTCCGGCAAATATATCTCACTGTTTCTTGCTGTTCAGTTAGCTTATCTGCTACAGGCGGTGAGAGCGACAGGGAAATGTGATACagtattcaaagggttctccaacTGCTTGCTGAAACTCGGGGAGAATATGGCCAACTATCCACAGGAGCTGGACGAGAAGGAAAATCTGCAGACCATCTGCATATATTGGGATGACTTCCACTCATGTGCGACCACTGCGCTGGCGGATTGCCAAGAGGGAGCAACAGACCTATGGGAGAAGCTCAAAAAGGAGTCCAGAAACTTGGAGTTCCGAGGGAGCTTGTTTGAACTCTGTGGTGGGGGGAACGGGGCCTTCAAATCCACAGTTCCTTTTGGTCTCACGATGCTTCTAACGGCACTTTCAGCCTTAGTGACTTGGCTTGCATTTtagcagaagaaaaaaaaaaaaaaaaaagcgggGAAAAAATtacaaagaagaaaaaaagaaaacgagTGCTAGCTATCcacacacaaaaaatacaaaacaaaagacGTTTGAATTCATCTACACCCAAATGGATTTATAGGCTACTTCATCCGGAGAAGGCGACCTGATTTTGCAAGAGACATTGGCAGGCCGTCTTCTGGGACTGCTCCACCATATTTGTCTGACCTGGGGTCAACTACATTAAATATTTAGCAGGTGTTGAGTTGGAATGATAATGAAATTTTGATGGATCCTTGCCCGCATACAATCGTGGAATGGCATAGTATTAAAGTCGACAATTAATTATTTATATTAGTAGCCTTAGACTAGACATCCCTGTTATTTCAGGTGATTGCAGATTGCAAGCTGCTCATACTCAGTAGGCTAATGCGAGACATGCTTACCTCAACGAAATCAACAACAGAAAGGCAATTTGCTCCAGGTCGGTCTCCTATACTCACCATTTagatattttatttgatttaatttgcCAAATTTATAATGTCGAGCCAAGTATAAATCGAAAAGGTTGTTTGTGGATCTGATATTTCTACTTTCATATGATGTCTATAACCATCACCCtaggaaaaaataaatataaatagcaTAGTAATAAGAATGAAAAAAGAGATCTCAGGAATGACTACAGGCATTCAATGGTACATTTTGATGGTTGGTTATTACGTAAAAATGATGGCAATACGATGACTTAAACTTGGCCAATGTAGCGAACGAAAACAATGGCTGAAGAGTGATATGACTGTTGCCATTCTATGTTAGCACATTACCATCCATTTATGAAGAAATATAGGCTACCCCTAGGCCTAGGGTATAACCTACATGAAACCATACATCCCAAAAGAACAGTAGCACGAGAATACTCAGAATGCGAAATCAATCGCTGGATGAAGCGACATTTTGCTAGCTTTTATTGATGTTGCCAAGGCATAGACCCGGTTTCACTGCCTTCAAAAATATGTGtattatgtttgtttgtttgtttgttttggggATGTTGCATATAATACCTGACTATTCCAAATCATTTAAGTAAATAAGAGACTATGTATATCAAATGAATTTTGAAAAAAATGATAAGAGTCTACCTTATCCCAAACAGTTTAAAAAACAGATTGATTATTATCcaggtatataaaaaaaacagattgcTAAAATTATGAAGAATATTAAATAAAACAGTTAATGTTT

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1462460 lncRNA upstream 6638 31434618 ~ 31434856 (+) True G1280687
TU1462459 lncRNA upstream 8625 31432287 ~ 31432869 (+) True G1280686
TU1462456 lncRNA upstream 11711 31429555 ~ 31429783 (+) True G1280683
TU1462454 lncRNA upstream 13934 31427071 ~ 31427560 (+) True G1280681
TU1462441 lncRNA upstream 31942 31409339 ~ 31409552 (+) True G1280668
TU1462527 lncRNA downstream 7172 31454670 ~ 31454892 (+) True G1280754
TU1462567 lncRNA downstream 40930 31488428 ~ 31488636 (+) True G1280793
TU1462582 lncRNA downstream 52079 31499577 ~ 31500277 (+) True G1280808
TU1462591 lncRNA downstream 56089 31503587 ~ 31504112 (+) True G1280817
TU1462600 lncRNA downstream 63630 31511128 ~ 31511451 (+) True G1280826
XM_036944292.1 mRNA upstream 108797 31306646 ~ 31332697 (+) True wdr97
XM_021563064.2 mRNA upstream 135057 31289763 ~ 31306437 (+) False dync2i1
XM_036944299.1 mRNA downstream 311228 31758726 ~ 31792146 (+) True LOC110490003
XM_021563083.2 mRNA downstream 463288 31910786 ~ 31924479 (+) True LOC110490007
XM_021563084.2 mRNA downstream 515337 31962835 ~ 31974011 (+) True inhbaa
LOC118938888 mRNA downstream 560623 32008121 ~ 32011745 (+) True LOC118938888
XM_021563088.2 mRNA downstream 903307 32350805 ~ 32479989 (+) False LOC110490011
TU1461526 other upstream 494164 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 1033477 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 1138075 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 2625684 28815366 ~ 28815810 (+) True G1277279
TU1458659 other upstream 2817276 28574316 ~ 28624218 (+) True G1277159
TU1463280 other downstream 548669 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 1240060 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 2664309 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 4588085 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 5061580 36509078 ~ 36510512 (+) True G1287489

Expression Profile