RNA id: TU1463625


Basic Information

Item Value
RNA id TU1463625
length 1509
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110490011
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 32350805 ~ 32480547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGCCTGGTCTAGAATCAACTCTTATTGCAGCATGTTAGAACCCTTGGTGGACAGTGTTTGGTAAAGATGTGGTTGGACTGGTCTAAGAGCAGTGCTAAAGACAGTGGGTTATTTAGGCACCTTGTTAGGTTTccaaaattccagtaactttcccaatatttccagaaatcctggttggaaccaatcacagccagagaaagaggaggaggttgTAGAAATTAGAGATTTCAGTTGTTGTGGGAATTGGCTGTTTAGCTCTTACCTAGGGATAATTGCACTGGGTTTCTAGGCTAGCTAGAGAAAGGGTatgtgccgtttgggatgcaggCATAGAGGTCATGCAGAGGTTCCATCATGGCCGTTGGTGGCCCCGGCATCTCCCTGCGATACACAGTAACTGGTGGCTCAATAGCTGACAACTTTTTTTTCACTTATTTGTAACAGACATTTTGAGGTGGTGCATATGAGTCAGCAAAGGGGCAATTGATTGTCAGCTATTGATTAACTGATCTAATGATACATAAGCCGCCCTGAGTATTGTTATATTAGACAAACACTGAAGATGTATTGAAAATGCTGTAAATGTATGGTGCCAGTAAACCAGACTAGTTCAGTTACATTGTCTGTAGATAGATACCGCAGTAAACAGCATAAACAGTACCCACTGGGCATATACTTGTTGAATCGATGTtgtttgaatcaacgtggaaaactgatttgatttgaaaaaaatacataaaaaataaataaaaaaaacatccaacttttaacctaaatccaatgacctggtgacattttttgttgatttcacgttgaattttaccaaatgtaaatcaaaactagatgttgaactaaTATGGACACAACTCAAGGCCTCACACCCAGCCAGGCTTTGGTTTGGTTCCCAAATTgctacctattccctatatagtgctgtacttttgaccagagtcctatgggtatCTGTCTCCATCATAGCTAGCCCCTTATCTGAAGGTCTAATGGCCAAAGGATTTCTTTAGGTCAGTGgtggctgttgaggggaggatggctcatagaTTGGAATGGAAAGTTACCTTTCCatgtattccattccagccattacaatgggcCCGTCGTTGGGTTTAAAGTGGCACCAGCCACCATTGCTTTAGATCAGTGTTGTTTGATGTAATAATACATACAGCCAGTAAAATGACTTGAACCAATGGACTCAATGTGTTGGAAATCCATGTTGTACTGCCAATAGATCCATTGTTAAAAGATGCAATGCATGATGCTTGGGTGGAGTTAGTAGAGGTTGGGGTCTCATATGCAAATGAAGGTAAAGAGGAATGTCaaataatatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttatgaaatacttttttctttacatagttgaatgtgctgacaacaaaatcacacaaaaatgatcaatggaaatcaaatttatcaacccatggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1463627 lncRNA upstream 522 32476924 ~ 32478439 (+) False LOC110490011
TU1463706 lncRNA upstream 16972 32461584 ~ 32461989 (+) True G1281868
TU1463668 lncRNA upstream 73122 32405518 ~ 32405839 (+) True G1281830
TU1463451 lncRNA upstream 357058 32120963 ~ 32121903 (+) True G1281623
TU1463279 lncRNA upstream 483368 31995329 ~ 31995593 (+) True G1281461
TU1463626 lncRNA downstream 1334 32481881 ~ 32482322 (+) True G1281792
TU1464083 lncRNA downstream 43589 32524136 ~ 32524326 (+) True G1282223
TU1464090 lncRNA downstream 46437 32526984 ~ 32527247 (+) True G1282230
TU1464092 lncRNA downstream 46798 32527345 ~ 32527558 (+) True G1282232
TU1464108 lncRNA downstream 60965 32541512 ~ 32541751 (+) True G1282248
LOC118938888 mRNA upstream 467216 32008121 ~ 32011745 (+) True LOC118938888
XM_021563084.2 mRNA upstream 504950 31962835 ~ 31974011 (+) True inhbaa
XM_021563083.2 mRNA upstream 554482 31910786 ~ 31924479 (+) True LOC110490007
XM_036944299.1 mRNA upstream 686815 31758726 ~ 31792146 (+) True LOC110490003
XM_036944298.1 mRNA upstream 1031463 31441494 ~ 31447498 (+) True nrn1a
XR_005036356.1 mRNA downstream 452249 32932796 ~ 32932850 (+) True LOC118938962
XM_021563090.2 mRNA downstream 533659 33014206 ~ 33016957 (+) False LOC110490013
LOC110490956 mRNA downstream 619334 33099881 ~ 33262044 (+) True LOC110490956
XM_021563092.2 mRNA downstream 1796474 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA downstream 1810291 34290838 ~ 34325910 (+) True LOC110490016
TU1463280 other upstream 482448 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 1531631 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 2070944 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 2175542 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 3663151 28815366 ~ 28815810 (+) True G1277279
TU1464164 other downstream 207011 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 1631260 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 3555036 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 4028531 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 5702889 38183436 ~ 38184003 (+) True G1289491

Expression Profile