RNA id: XM_021563090.2


Basic Information

Item Value
RNA id XM_021563090.2
length 2752
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110490013
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33014206 ~ 33016968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgcccccccctctctctctctcgctttctttctttctcattctTCCTGGAGGCTGCCAGTTGATAGCAGTGTAGAGAGAGTGCCAGGGGCTAAGGAAGGCTAACATCAGCAGATGTCTGAAGAAAATGACTCTGCTTGACCAGTTTGGGGGCTGGATGAGGCAAAGAAGAGGATCAAACATTGGGATTCATTCTGCTTTCCACCACCTGCCGGGCGCCTGACTCTGAGCATGGAAGACAACAGAACAAGAGGACCATTGAGCACGCAGCACTGAGAATTTCGGAGTATACTGATGGACTTAACTAGGTGGATTAATAGCCCTAAACAAGGCTAGAATGGTGACATTAACATTTTACTAAAAGGCTTAGAGAACCAACTAAGAGAACTACCAACTACACAATGAATGCCACAGAATACCAGGGTTCGATCTCTGTGAGCTATAACAGGAACTCCAGCACTGCTGGGACTCTGGTATCCGTCAACAAAGACTCAGAGGGCATTGGTCTCAATGACTCTTCGACAGGATGTTACGACCAGCTCCTCATCTCCACCGAGGTCTTCCTCACACTGGGGATTGTCAGTTTATTAGAGAACATCCTGGTGATTGCCGCTATCATCAAGAACAAGAACCTCCACTCTCCCATGTACTTCTTCATCTGTTCTCTGGCTGTGGCCGACATGCTGGTCAGCGTCTCCAATGCCTCCGAGACGATCGTCATAGCCCTGATCAACAGCGGCAGCCTGAGCATCTCTGGGTCACTGATAAAAAGCATGGACAATGTGTTCGACTCCATGATCTGTAGCTCACTGCTGGCATCAATCTGTAGTCTCTTGGCAATCGCCATAGACCGCTACATCACCATATTCTATGCACTGCACTACCATAACATTGTGACGGTAAAAAGAGCGCTGGCGGTGATCTCCCTCATATGGTTGTGTTGCGTGGTGTCGGGCGTGCTCTTCATCATCTACTCTGAGAGCACCACTGTCCTCATCTGCCTTATCACCATGTTCTTCACCATGCTGGCACTCATGGCCTCGCTCTACATCCACATGTTCCTCCTAGCCCGGCTACACATGAAGAGGATCGCCATGCTGCCTGGGAACGCGCCCATCCGCCAGCATGCCAACATGAAGGGTGCCATCACCCTCACCATCCTCCTAGGTGTGTTCGTAGTGTGCTGGGCTCCCTTcttcctccacctcatcctcATTATCTCCTGCCCTAGGAATCCCTACTGTGCCTGCTTCATGTCGCACTTCAACATGTACCTCATCCTCATCATGTGTAACTCGGTCATCGACCCACTCATCTACGCACTCCGCAGCCAGGAGATGAGGAAGACCTTCAAGGAGATCTTCTGCTGGTACAGCTTgccaaacctgtgtgtgtgtgagctcccTGGGAAATAGTGACCCTTTGAACAGCTGACAACTACTGAGGTGGCATCTGCCTTTGTCTCCTCACATGAAAGAGACAGCTGAGAGGTTGTGTACAGCATGAGGTCTTTGATGCTGATGCTGATTGTGATTGGTGAGGACTGATTTGCCCTCTTTCTGCCCGTGCTCCAGGACATGGCTGTAAATTCTTCAAAAGTAGTTCCTCTTAACCGGTTCTGGTTACCATGGCTCGGGTAGACAAAGAGAAGGTTGGTTTACATACAAACTGTaaaaacagaacacaacacaaaacCCATTCGTTCTCTACAGCACAATCAGGTATCTTTTTGTTTGTCTCGAACAATTCTGTTTTTAAAGTAACTGACCCATAATGTGAGAagatatgatgatgatgatatgagAAAGATATCTATTTAAAATAAGTTAGATATTTTAATATTTAAAACATATTTGAAGTACTGAGTGGCAGCTGCCTACACACTACGGTCTTTTTTCAAGGATAACATACGAAAGTAGTGCTCACGAACCAAAACTGGTCACCGAAAATTGTGCACAGtcgtgtactacgtcatccaatTCGTATGATTATATTAGGAATTCAAATGTTCTACGATATATTTGTAAGTGCTTAAGATCCAGGACTGCATCTTTAAATGGCACACTATATGACAGTGTACGTTTATTTCATACTCTGAACGATTGAAAGTGGAAAGCTTAAAAAATATAATCTACCTCCCGGagcaaacagtaaaaaaaaaaactaaagtcTTGCACCGTGCTTTGTAGACTAAATGTCAGAGGATTTTCCTTTAGCCTATCTTACTAGGCTGACAACTACAACACATAGTGGCTCTAaattgaaaaaaaacaacaacaaagtgaAGCACTAATTGAAATGATTTCTGTTGAGAATAAACCCAGTCGAGAGAGCTACATCTCATTTGATTAAAAGCTAAAAGCTACCTATGCtgcttgaaaaaaaaaacagaccttGTGTGCATTTATAAAGTCACCATTACATGACACAGACACACTTTCATCTATATTTTTAATTCATCCTCAATATGCGTTCATCAAGTGCTTGGATAATTCTTTGCAGACTTATTTTACAGTGTACATGTAACTTCTTATGTATGAATTCTATAATttcctaaccccaaccctaattcTAGATTCTATTGATATTGTATTTTGCTCTAAAATGTAAACGATGTGAGTATGTGCTTTTGTGTTCTTATCATGTCGCTTGTTGTTCTGGCCTTAAACATGCTGCACTGTGATGTAAAATAACAATTTCAATGCCAGtgttatatatacatattttaataAAATCATGTGGAAAGCCTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1464721 lncRNA upstream 7817 33006175 ~ 33006389 (+) True G1282845
TU1464682 lncRNA upstream 38590 32975231 ~ 32975616 (+) True G1282807
TU1464673 lncRNA upstream 42299 32971705 ~ 32971907 (+) True G1282798
TU1464666 lncRNA upstream 45438 32968498 ~ 32968768 (+) True G1282791
TU1464653 lncRNA upstream 52579 32961425 ~ 32961627 (+) True G1282778
TU1464749 lncRNA downstream 15516 33032473 ~ 33032808 (+) True G1282871
TU1464905 lncRNA downstream 120962 33137919 ~ 33138178 (+) True G1283020
TU1464910 lncRNA downstream 123487 33140444 ~ 33140718 (+) True G1283025
TU1464922 lncRNA downstream 130055 33147012 ~ 33147224 (+) True G1283037
TU1464926 lncRNA downstream 131432 33148389 ~ 33148910 (+) True G1283041
XR_005036356.1 mRNA upstream 81356 32932796 ~ 32932850 (+) True LOC118938962
XM_021563088.2 mRNA upstream 534217 32350805 ~ 32479989 (+) False LOC110490011
LOC118938888 mRNA upstream 1002461 32008121 ~ 32011745 (+) True LOC118938888
XM_021563084.2 mRNA upstream 1040195 31962835 ~ 31974011 (+) True inhbaa
XM_021563083.2 mRNA upstream 1089727 31910786 ~ 31924479 (+) True LOC110490007
LOC110490956 mRNA downstream 82924 33099881 ~ 33262044 (+) True LOC110490956
XM_021563092.2 mRNA downstream 1260064 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA downstream 1273881 34290838 ~ 34325910 (+) True LOC110490016
XM_021563093.2 mRNA downstream 1606957 34623914 ~ 34822015 (+) False LOC110490017
XM_021563094.2 mRNA downstream 1975466 34992423 ~ 35361339 (+) False LOC110490018
TU1464164 other upstream 316170 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 1017693 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 2066876 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 2606189 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 2710787 30303033 ~ 30303419 (+) True G1279349
TU1466288 other downstream 1094850 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 3018626 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 3492121 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 5166479 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 5577923 38594880 ~ 38600241 (+) False G1289710

Expression Profile