RNA id: LOC110490956


Basic Information

Item Value
RNA id LOC110490956
length 2849
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110490956
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33099881 ~ 33262044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGACAATCTTCTGGATGTCAGAAGTTCCACTTCATGCCTAGCTTTGTCCACTTCTTACCTGATGGTGGTAAGGAGGTGTTGTCCATGCAACAGGTGCTCCTCTACGTCCAGCAGAGCTCCAAGCATCTGGTCCCTGAGGAGGAGATAGCTGACATGCTGCGGTGGTAGGAACTGGAGCAGCAGAAGTATGCAGAAGAGTGCAAGGGCATGATTATCACCAACCCTGGCATGAAGCCCAGCTCTGTGCATATCGAACATCTGACCAGAGAGCAGTTCAACCCAGAGGTCAACACCTTCCCCACCATCGTCCACTTTGGGATCTGGCCCATCCAGCTCAGCTCCCCCGGGGACCCGCAGTActcaaagCTGTGGAAACCCTACGTGAAACTACGCCACCTGCTGGCTAACAGTCCCAAGGTCAAGCAGATAGTCAAAAAGAAGCTAACACAGAGGCAGGAAGCTATGCAGAAGATTTGACAGAAGAACACCATGTGCCGGGAGGTGACCGTTGAGCTCACTAGCCATGAAAGAGTGGCATCCGCTTCTGGAAGACTGGCATCCGCTCTGACGTCAATCAGCATGCCATGATGTGTTCCGTGTTGACCCACCACGTCTGCTACCACCACTGTCTGAAGCACCTGGACAAGCTGATTGGCTACGTCTTCAAGGAGCGCTGCCTAATACAGctGGCCATGACTCACCTCAGCCACCACCTGAACTTCGGCATGAAACCAGACCACGCCCGAAACTTCCTGTCCAACTGTGGCATCCGCCAGCCCAAGTATGGAGACAGGGAGGTCCTCCAAATGTATATGATGAGGAAGAAGGGAATCAACACCTTGATCAACATTAAGTCTCGTCTCAGACAAGACGACCCCTTCCcttccagGATCAATCACAACGAGCGGCTGGAGTTTCTTGGCGATGCCATTGTGGGGTTTCTCACCAGTGTCCATCTTTACTACCGGTTCCCCTGTCTGGAAGAAGGAGGCCTGGCCACCTACAGAACAGCCATTGTACAGAACCAGCACCTGGTTATGCTAGCGAAGAAACTGGAGCTGGATCGCTTCATGTTTTATGTAAACAGACCAGACCTCTACAGGGAGTCAGACCTGAGACCCGCCATGGCCACCTGCTTTGAAGCCCTCATAGGTGATTTATTTTATTTGGAGGGCGGTGTAGAGGAACCAAAGCAGCTGTTTGGGAGGCTGCTTTTCAATGTAGAGGACCTACGGGAGGTTTGGCTCAACTATCCGCCCCACCCTCTGCAGGATGGTTGGAAATAatctattttttttGTGCAGGAGCCGCAGATGGACAGGCAGCTGATCGAGATGTCTCCGGTGATTCAAAAGCTGACGGACTTTGAGGACGCAATTGGTGTTATGTTCACGCACTGTCGCCTGCTGGACAAATCTTTCACACTGAGGACTGTGGGCTTTAACCACCTCAAACTgggtcACAACCAGAGAAGGGAGTTCCTGGGAGACTCCATCATGCAGCTGATGGCTACAGAGTACCTCTTCATCCATTTCCCTGACCACCACGAAGAACACTTAACATTGTTGCGTAGCTCATTGGTAAACAACCGTACCCAGGTCAAAGTGGAAGAGGAGCTGGGCATGCCATCACTGACGACAAAGCCAAACGGCTCGTGGCCCTCCGCACCAAGACCCTAGCTGACCTGCTGGAGTCTTTCATCGAAATGCGCTACATCGATAAGGACCTGAAGTAAGTTCACACCTTCGTGAACGTCTACTTCTTCCCTCAACTGAAggagaacttcATCCTGAACCAGTAAAGGAATGATCCTAAATCCCAGCTCCAGCAGTTCTGCCTGACCCTGGGCACAGAGGGCAAGGAGCCTGACATCCCCCTCTACAAGACCTTGCAGACAGTGGGGCCGGGCAGTCTCACGCGCGGACCGAGACTGTGGCTGTGTATTTCAAAGAAGAGAGGATAGGCTGTGGCAAGGGCCCAAGTATCCAACAGGCGGTGATGGAGGCTGCTATGGACGCGCtacaaaagtatctatatccacagATGTCTCATCAGAAGCGATTCATCGAGCGGAAGTACAGACAGGAGCTGAAAGAGATTAAACGAGAGAGGGAGCGCCAGAAGAAGGTGGGAGACGAAGCAGAGGAAAGTAGGAAGTAACAGAGCCTTTCTCTGACCCATTCGAGATGGACAGAGGACTTCTTTGACCAATTGAGATGGATGATATTGAATAGCGCATGGAAGGAGCAGGAAGTGGAGGGATGAACAATTTACAAACACTGAATTGCAAACAAAAAATGCATTTTCCTCTGACTACTCCCTTCATCTGCATCCGACTGGAGAAGATTTGTCAGGTGTAAACAATATGTTGGCAGCTTATCATTAGACttgctttcacctggtcagttctttcagatcagtgcaatgaaggagagactgagaggagaggacacattTCTAGACAATTGAGAAAGACCACCAGTCTACAGTCCACCCTGTTCTGTCTCGTCCCATTTGTATTGTGCTTGGTTGCGTTTGTGGTTGTTTTGAGCTGCTTTCATGTGTAGGTCTTAATCAATTTCATGTTGATTATGTACAGTCAGTTTTTACCTAAATCTACAGCACTGTTGGTCGTCGCTCATGATAATGAACGGCATCAACAGAAATGCTATGTTTTAAATGTCAATTTTTACTGCAAGTGATATTGATACTAATTGATATTTATAAGGGTATTTGAAATATAGATTTTTCATTATAATGACATCTGTCCTCTTGATAGCCATACTCTTCATAATCAGTGTCCAACGACAAATTGCTTAATGGGAAAACTAGTAGTGGCATATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1464749 lncRNA upstream 67073 33032473 ~ 33032808 (+) True G1282871
TU1464729 lncRNA upstream 82913 33016170 ~ 33016968 (+) True LOC110490013
TU1464721 lncRNA upstream 93492 33006175 ~ 33006389 (+) True G1282845
TU1464682 lncRNA upstream 124265 32975231 ~ 32975616 (+) True G1282807
TU1464673 lncRNA upstream 127974 32971705 ~ 32971907 (+) True G1282798
TU1465067 lncRNA downstream 561 33262605 ~ 33268078 (+) True G1283172
TU1465248 lncRNA downstream 98968 33361012 ~ 33361285 (+) True G1283335
TU1465251 lncRNA downstream 101473 33363517 ~ 33363845 (+) True G1283338
TU1465263 lncRNA downstream 107683 33369727 ~ 33369963 (+) True G1283350
TU1465268 lncRNA downstream 109234 33371278 ~ 33371783 (+) True G1283355
XM_021563090.2 mRNA upstream 82924 33014206 ~ 33016957 (+) False LOC110490013
XR_005036356.1 mRNA upstream 167031 32932796 ~ 32932850 (+) True LOC118938962
XM_021563088.2 mRNA upstream 619892 32350805 ~ 32479989 (+) False LOC110490011
LOC118938888 mRNA upstream 1088136 32008121 ~ 32011745 (+) True LOC118938888
XM_021563084.2 mRNA upstream 1125870 31962835 ~ 31974011 (+) True inhbaa
XM_021563092.2 mRNA downstream 1014977 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA downstream 1028794 34290838 ~ 34325910 (+) True LOC110490016
XM_021563093.2 mRNA downstream 1361870 34623914 ~ 34822015 (+) False LOC110490017
XM_021563094.2 mRNA downstream 1730379 34992423 ~ 35361339 (+) False LOC110490018
XM_021563095.2 mRNA downstream 1878119 35140163 ~ 35361339 (+) True LOC110490018
TU1464164 other upstream 401845 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 1103368 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 2152551 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 2691864 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 2796462 30303033 ~ 30303419 (+) True G1279349
TU1466288 other downstream 849763 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 2773539 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 3247034 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 4921392 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 5332836 38594880 ~ 38600241 (+) False G1289710

Expression Profile