RNA id: XM_036944303.1


Basic Information

Item Value
RNA id XM_036944303.1
length 2873
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110490016
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 34277021 ~ 34325910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTCCAGTGAGAGTGTCAGCCCACTTTCTCCTGCTCCTTCTCTCCCAGAAAACTAAGACCCAGCGGCACTCATGAGAGCGACCCCACTTCTGTGAACACTGCTGCACTCGAATATGGACAGAGGCGATGGTAACGTGAAGTACATTCTCACTGGAGAAGGGGTGGGAAGCTTGTTTTTAATAGACGAGAACTCAGGTGACATTCACGCCACTAAGAGgttggacagggaggagagggccATATACACACTCCACGCTAAGGTGGTGGACAAGAGGACAAATGAGACACTGGAGGCTGATACTGAATTTAACATCAAGATCCACGACATCAACGACAATGAGCCAAAGTTCTCTAAAGACCTTTATTTCGCCAGTGTCCCAGAGATGTCTGACGTAGGCACATCAGTCATTCAAGTCACCGCGACAGATGCTGATGATCAAACATACGGGAACAGTGCCAAGCTTGTGTACAGTATTCTACAGGGTCAACCATATTTCTCAGTGGATTCAGACAATGGCACGATTAGAACAGCCCTGCCTAACATGGACAGGGAGACCAAGGAGAACTACCAGGTTGTGATCCAGGCTAAAGATATGGCTGGCCAGATGGGTGGGTTATCAGGGACCACCACAGTCAGCATTACCCTCTCTGATGAGAATGACAGCCCACCGCGATTTGCTAACCATACGTTTcgtctgagcactctggagtcGGCTGAAGTAGGAGCAGCCATAGGTCGGATCAAGGCTAACGATGCGGACGTGGGGCGGAATGCTGAGATGCAGTATAGCATCGTCGACCGAGACGGACAGGATATGTTCACGATCATCTCCGACCAAAACACACAGGAGGGCGTTATCAGGGTAAAAAAGCAACTGGATTATGAGAAACAAAGGACGTACTCATTCAAAGTGGAGGTGACTAACACCTATCTGGACCCCAGGTTCATGTACAGTCCAAACCCTCCTTTCAAAGATGACGCCATGGTGAGAGTGACGATAGAGGATGTGGATGAGCCGCCAGTGTTTAGCAGGAACCCTTATATCATTGAGGTGCACGAGGACACAGCCGCTGGCAGCTTTGTTGGTGTGGTGTCTGCCAGGGACCCCGATGCTGACAACAACTCAGTCAAATACTCCATTGACCGCCATACCGATTtggagagactgttcaacattgATTCTGTTAACGGCACCATTACAACACTGAAAGGCCTCGACAGGGAGATGTCAAAATGGCATAACATCTCTGTTGTTGCAACTGAAATAAGTAACCCTCGCCAAACCACTCGAGTCCCAGTGTTCATCAAGGTCCTGGACGTTAACGACAATGCACCTGAATTTGCCATGTATTACGAGACATTTGTCTGTGAAAATGTCCAATCAGGACAGCTGATTCAGACGATAAGTGCGGTTGACACAGATGAGCCCCTTGTTGGACATAAGTTTGTCTTCAGCATAAGCTCCTCCAATCCAAACTTCACTATCGTTGACAATGAAGATAACACAGCCAGGATCCTGACTCGGAGGGCAGGATTCAGCCGCCGTGAGATGAATACCTACCTACTGCCCGTGGTGATCTCGGACAATGACTACCCTATCCAGAGCAGCACCAGCACTTtgactgtgaatgtgtgtgcctGCGACAGCCGGGGGAACATGCAGTCCTGCAACACTGAGGCTCTGCTGTCTGCGGGGCTGAGCACTGGAGCCCTGGTGGCTATCCTGCTCTGTGTCATTATCCTCTTGATGATCGTGGTGCTGTTCGCTGCCCTGAGGAGGCAGCAGAGGAAGAAGGAGCCTCTGATCATCTCCAAAGAGGATGTGAGAGACAACGTCGTCAGCTACAACGATgaagggggtggagaggaggacacCCAGGCCTTTGATATTGGCACGCTGCGCAACCCAGAGGTGATGGACGCTAACAAGCTGCGCAGGGATATCATCCCAGAGATGCTATTTCCCTTCCAGAGGACATCTCCTATAAAGGATAACGCCGACGTCAGAGAATTCATTCATGGGAGGCTTTATGAGAACGACTCGGACCCCACCGCGCCGCCCTACGACTCCCTGGCCACCTACGCCTATGAGGGGAGCGGCTCGCTAGCCGAGTCCCTCAGCTCCCTGGAGTCAGGATGTGTAGAGGGGGACCAGGAGTACGATTACCTCAGCAACTGGGGACCCCCGTTCAAAAAACTAGCAGATATGTATATAGGGAAGGACACGGCGAGAGAAACCTAGATCATAATTAGGCCTATACGAAAGCAGCTCATCATCAACGTCATGTCTCAataatctctctcacacactttcctGCCACCCATCCATTGATTCATATGAATGGTCAAGTAGATTTCAAGACTTGAACATTACTCTCAACACTGGTGGTGACATTTCTCACAGTTTTACTGTTTTTGGTATAATCAGTAAAGATGCCTTTGAATTTTAGGAAATTTTGTGAACAATGGTGTGGACAATGTGTTTTGTAACTGAGGAACGAGATAGTAGTCTTGTATACTATCAATGTTTAATGGGAAAACATATTCAtgaaaaaaagtaaaaaatattaaaaaatgcTTTTCCAGCAAATTACATTTGAAATAGATACATGTATGAACTGTTTTTCCATGATGGACATACTATATCCTATTCACTATCTTTGTTTGACAAACAATGTTCATGTGAACGGTTGGTAAGGTTTATTCGTCAAACTGTGGATACATTTCATCATAGGTGTACAATGTAATAAGGACGTGTACGTTGTAGGGTAACTGTTACACACTGAATTCATGTTGTTTGATTGCCAAGTCatattgttttatatttatatttttatactTATTTTATTAATAAAAATTCCCCAAAAACA

Function

GO: NA

KEGG:

id description
K06801 CDH9; cadherin 9, type 2, T1-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1466468 lncRNA upstream 62256 34228288 ~ 34228582 (+) True G1284530
TU1466465 lncRNA upstream 63672 34226762 ~ 34227166 (+) True G1284527
TU1466364 lncRNA upstream 125914 34164604 ~ 34164924 (+) True G1284430
TU1466275 lncRNA upstream 187051 34103324 ~ 34103787 (+) True G1284341
TU1466274 lncRNA upstream 187251 34103324 ~ 34103587 (+) False G1284341
TU1466743 lncRNA downstream 90817 34416727 ~ 34416964 (+) True G1284800
TU1466903 lncRNA downstream 200761 34526671 ~ 34527044 (+) True G1284957
TU1466912 lncRNA downstream 207575 34533485 ~ 34533740 (+) True G1284966
TU1466914 lncRNA downstream 208074 34533984 ~ 34534317 (+) True G1284968
TU1466916 lncRNA downstream 210186 34536096 ~ 34536327 (+) True G1284970
LOC110490956 mRNA upstream 1028794 33099881 ~ 33262044 (+) True LOC110490956
XM_021563090.2 mRNA upstream 1273881 33014206 ~ 33016957 (+) False LOC110490013
XR_005036356.1 mRNA upstream 1357988 32932796 ~ 32932850 (+) True LOC118938962
XM_021563088.2 mRNA upstream 1810849 32350805 ~ 32479989 (+) False LOC110490011
LOC118938888 mRNA upstream 2279093 32008121 ~ 32011745 (+) True LOC118938888
XM_021563093.2 mRNA downstream 298004 34623914 ~ 34822015 (+) False LOC110490017
XM_021563094.2 mRNA downstream 666513 34992423 ~ 35361339 (+) False LOC110490018
XM_021563095.2 mRNA downstream 814253 35140163 ~ 35361339 (+) True LOC110490018
XR_005036311.1 mRNA downstream 1290914 35616824 ~ 35619520 (+) True LOC118938916
XM_021563098.2 mRNA downstream 1410472 35736382 ~ 35815615 (+) False LOC110490019
TU1466288 other upstream 178567 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 1592802 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 2294325 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 3343508 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 3882821 30395867 ~ 30408017 (+) False htr5ab
TU1468667 other downstream 1709673 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 2183168 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 3857526 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 4268970 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 4268970 38594880 ~ 38600241 (+) True G1289710

Expression Profile