RNA id: XM_021563094.2


Basic Information

Item Value
RNA id XM_021563094.2
length 4220
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110490018
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 34992423 ~ 35361339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGTACTCTCCActgctcctctcttcttttctacTGCTCTGTTCTTCCTtacccccctcctttcctccttccccATCCAGCCGCTGGCTGAGTTCCCTCCGTTCCTCTTGTCTCTCAGTGCCAAGACCAGAGCCCTTCAGTGGACTGAGCCGTTTGATTCATGCGAGTGCTGATTCACGCCCTGCGATCTGGGGAGTGAGGGCGGGCAGCACAggatttcctctctctctacatccataATTCAGCGTTCGCACcttcctcctactcctcttctcctctttgccttcttcttcttcttcttactgctgctgctgccgtACGCTGCCGTTGCTTTTGATGTTATATTAGGTTACACTCCAGTTCCATCACAGCCTACCTGAGGTATCATTCACTGAGACGGAGCTCCGCTGTCTCCACTCAAAGTACACAGAGGATAAGTGGTGACTATTGGGAGACCAAGGACATTGATCTATGTGAGGAGGGTCCACAGTGCCAAACAACAAGgaaAGACAGAATGGTCACCATAATCAACTCCAGTTTCTGGTAAAACTACAAAAGTCATTGTCCGCCCATTTTCTACTCTAGACCCTGGCTGTTCCATGATGTAAGTGAAGCTTGCCATGATTCTTCTCAATTGACAGTTAGACCATGAACCTTAGAGACTCTATCGTTGCACGGACCAGGCCTTCCCCAGTTTGGATTTAGCGCCACCCTCATCTATCCATCGAAACCGCCAGCCACGTGAGGCTGCAGCGGTGGccggtggtggtggcggtggtgggAGGACCTTCACACATAGCGTAAAGCACGCTGGGATATTTTTCCCAAAAACACACTGAGGCACCACCATGAGGAAATCCACCACCTCCTGTCTTTGTCACATACTGGTCTGCCTTTGCTTCATCCAGAGGTGCTATGGGGCTAGCCATCATATCCCAGCAGACAAAGTGACCATCGCCAAGAACCAGACCAAACTGGCCAATGGTGAGACAGAAGTGCACCACAGGCCTAAACGTGGCTGGATCTGGAACCAATTCTTTGTTTTAGAAGAACACATAGGACCGGACACTCAATACGTTGGAAAGCTTCATTCCAACTCAGACAAAGGGGATGGCTCCGTAAGGTACATTCTGAGTGGGGAAGGCGCTGGGAGTATATTCATCATCAACGAGGTGACAGGAGATATTCATGCAACAGAAAGCCTGGACCGGGAGAGGAAAGCACACTACGTCCTCCACGCACAAGCCTTCGACCGCAACACTGAAAAGCCCCTGGAACCAAAGTCAGAATTCATCATCAAAGTCCAGGACATCAATGATAACGCCCCAACATTTCCAGATGGTCCTTTTGTAGCTGCTGTGCCTGAGATGTCTGGAGTGGGTACTTCGGTATATCAAGTTACTGCAACGGACGCTGATGACCCCACATATGGAAATAGTGCCCGAGTGGTCTACAGTATTCTCCAAGGACAACCATATTTCTCTGTTGATCCCAAAACTGGAGTCATCAGGACTGCCTTAGCCAACATGGACCGGGAGGCGAGAGAACACTATGCTGTAGTCATTCAAGCCAAAGACATGGCAGGATCAGTTGGAGGACTTTCTGGATCCACCACTATCAACATCACCCTCACCGACGTCAACGACAACCCTCCCAAGTTCCCGCAAAAAAATTACCAGCTGTACGTCCCTGAGTCGGCCCAGGTTGGCAAGCCAGTGGGGAAGATAAAAGCCAATGACGAGGACCTTGGAGTCAATGCAGAGATCAAGTACAGCATCATCAACTCCGAAGGAGCAGCCATGTTCTCCATCAACACTGACAGGGACACCAGGGAGGGAATCATCAGCCTCAAGAAGCCACTGAACTACGAGAGGAAGAAGACCTACACCCTTCAAATTGAGGGAGTGAATAGCCACTTGGAGCCTCTTTTTTCCTACCTTGGTCCTTTCAAAGATACTGCCACCCTAAAGATCACTGTGGGAGATGTGGACGAACCGCCTGTATTCTCTATGGACTATTACATCATGGATGTTTATGAGAACGCTCGGATTGGTAGAGAGGTGGGGGCTGTAACTGCCAGGGATCCAGACAGCAAAAACAGTCATGTCAGGTATTTCATCGACCACAGTGAGCACAGCGATAAGTATTTCAACATCGACATGGACAGCGGAGTTATAAAGACTACCCAGAGTCTGGACCGGGAGGACATGCCATGGCATAACATCACTGTGATAGCTTCGGAGGTTGACAACCCTAGCCTCCTCAGCCATGTCCCCGTCACTGTGCAGGTGTTGGATGTGAACGACAACCCTCCTGAAATTAACAAGGACAAGGAGGTCATTGTGTGTGAGAGCTCAAGGCCAGGACAGGTGATTCAGACTATGACTGCAGTGGATAAGGATGACTTTGCAAACGGACAGAGATTCTCCTTCTCGTTGCCGAGCGGAGTCCCTGTCAACCCCAACTTCACCCTCAAGGACAACGAAGACAACACAGCGAGCATCATCACACGGCGGAGGCAGTTCAGTCGGCTCGTCCAGGAGCTATACGAGCTCCCCATAGTGGTGTGGGACGGTGGGGAGCCAGCGCTGAGTGGCACTAGCACACTGACCCTGCGGGTGTGCCCGTGCCAGCGCAACGGGAGGGTGCAGACGTGCCAGGATGAGAGGGGACTCCTCTCCTCGGCAGGCCTCAGCACGGGGGCCCTGATCGCCATCCTGCTGTGCATCGTCATCCTGCTGGCGATCGTGGTTCTGTTCATCACCCTGCGGCGGAGCAAGAAGGAGCCCCTCGTCATCTCCGAGGAGGACGTCCGCGAGAATGTGGTAACATACGACGATGAGGGGGGCGGCGAGGAGGACACTGAGGCCTTCGACATCATCACCCTACGGAACCCCGCCGCCGCTGAGGAGCTAAAGTTCAGACGGGACATCCGGCCGGAGGCGGCCCGACAACGCGGGCAAAACCGAGGCTGCCACAGTCCCCCGGAGCTGAACCAGGTGGATGTGCAGGAGTTTATTAAACAAAGACTGGTGGAGGCAGACATGGACACTAGCGGTCCTCCATATGACTCCCTCCAGACCTACGCATATGAGGGTCAAATGTCTCCGACAGGTTCCATCAGCTCTCTGGACTCCCCGGGAACACACTCAGAACAGGATTATAACTACCTGGATGACTGGGGGCCTGAGTTTCAGAAACTGGCAGAACTCTACGTGGAGGATACGGATGTAGCAGAGTCAGATGTGGCAGTTGCGGTGACCGTGGCGACCTAGCCTGTCAACGTTGGTCACACTGTCTGTAAAACCaaaacctttctctctctcagtcctcctccTCGACTTGTTTCAAAACGATAAAATAGAAATGCTTTTGAACTCGTTCCAGCTGATCTACTTTTACTGTTGAATTGCAGACTGCCCCTTTTTTCAGTTTTCCATTTGGAACATGGGTCTAATATGCGGATGGATTGATTTTGGGGTGGAACAATGTTAAGGATTTCGGAAAAAGGAAAATATTTTTCCTGTTGTATATTTTTTATTGCTCAATAAAGTCCTTAATTCCATATGAGTGGATATATGTGAAACGGAGTGTCAACTTTTATTCTGAAGATTAAAGGTTATCTTAGAACAGACATCATCATGCAAAGATTTACGCGTTTAAAGCACAAGAAAAGTTATATTGAACCATCACTTTCACTTTCAGGTTTATCTATTCTAAACAATCATTACACCTGGTCATGTGTGACACCACACAAAAGCAATTCAATTGGCACTAAGGCTTTCTTAATCCATTTTACAACATAGATAGCTACAATTCTTCTTAAAATGGATGTTGATTGCAAAAGTGCCAATAACTGGGCTTTTAATTTTATACCAGTATGTACAACTGTCTGCCTCGATAAGATAAAGGTACCTTGCGTTAGAGAGTCATGACATTCGTGTTAAGAAAATAAAATACTATTCTGAAAAATGACATCAGAGGGGAATCAAGGATATTGCATTTGTTTATCATGGTCTATAAAACACGGTCCCTATAGACCTTGAAcattcgtcccaaatggcaccctattccctaggcctagtacactacttttggccagagcccttTGGGGCCTggttaaaaatagtgcactatatagggaatatagtgccatttgggatgaacatATGCAGGCTTTTTACTGAGTGTGCTTCTTTCATGAAAATAACTCAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1467564 lncRNA upstream 43597 34948620 ~ 34948826 (+) True G1285596
TU1467537 lncRNA upstream 60011 34932181 ~ 34932412 (+) True G1285569
TU1467521 lncRNA upstream 69565 34922641 ~ 34922858 (+) True G1285553
TU1467500 lncRNA upstream 86271 34905937 ~ 34906152 (+) True G1285532
TU1467496 lncRNA upstream 91029 34901182 ~ 34901394 (+) True G1285528
TU1468424 lncRNA downstream 224525 35585864 ~ 35595089 (+) True G1286423
TU1468441 lncRNA downstream 235765 35597104 ~ 35597365 (+) True G1286440
TU1468494 lncRNA downstream 280218 35641557 ~ 35641912 (+) True G1286491
TU1468500 lncRNA downstream 289167 35650506 ~ 35650830 (+) True G1286497
TU1468510 lncRNA downstream 298609 35659948 ~ 35660264 (+) True G1286507
XM_021563093.2 mRNA upstream 170408 34623914 ~ 34822015 (+) False LOC110490017
XM_021563092.2 mRNA upstream 666513 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA upstream 666513 34290838 ~ 34325910 (+) True LOC110490016
LOC110490956 mRNA upstream 1730379 33099881 ~ 33262044 (+) True LOC110490956
XM_021563090.2 mRNA upstream 1975466 33014206 ~ 33016957 (+) False LOC110490013
XR_005036311.1 mRNA downstream 255485 35616824 ~ 35619520 (+) True LOC118938916
XM_021563098.2 mRNA downstream 375043 35736382 ~ 35815615 (+) False LOC110490019
XM_021563097.2 mRNA downstream 403758 35765097 ~ 35815615 (+) False LOC110490019
XM_021563099.2 mRNA downstream 424359 35785698 ~ 35815615 (+) True LOC110490019
XM_021563100.2 mRNA downstream 486547 35847886 ~ 35895107 (+) True LOC110490020
TU1466288 other upstream 880152 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 2294387 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 2995910 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 4045093 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 4584406 30395867 ~ 30408017 (+) False htr5ab
TU1468667 other downstream 674244 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 1147739 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 2822097 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 3233541 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 3233541 38594880 ~ 38600241 (+) True G1289710

Expression Profile