RNA id: XM_021563102.2


Basic Information

Item Value
RNA id XM_021563102.2
length 4733
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110490021
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 35897274 ~ 35988249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATCATacttggcagacagacagacaggcggatgGGAGAAGAATAGACCAACGCAGTGCTCACAAGCGATAGCACCACAACTGGGTGGAAACGAGGCAGGGGATGGATGGTATGGTTGAATATCGAATGCCAGCCTACTATATATTTAGCAGTTTAGAACACTGAAATATCTGGAGGAAAAGTTCCGCCGAAAACAACCGCCGTTGACTAGCTTATCCTTTGGAGATAAAGAAGAAACCATTCACAAGTGTAGGGGAGCCCAGTGAGAGATGTCGATCCCCCCCCAACCTTCTGATTCTGAACACCACCTAAAGGTCAGAGGTTGAAGGGTCACCGGTCAGGGGTGGTCAACACCATCATGGCTGACAGTGAGGGGCTTGGCGGCGGTGGGGTTGATCTGCCCATTCTCGCACCGGGCCAGGTGTACGTGGAGGTGGAGTATGACTATGAGTACAAGGCCAAAGATAAGATGATCTCCATCAGGCAGGGGGAGTGCTACATGCTGGTCAGGAAGACCAACGAGGACTGGTGGCAGGTACGGAAGGAAGAGGGGATGAAAGCCTTCTATGTCCCAGCGCAGTACGTCAGGGAGGTGCGCCGGGCGCTCATGCCCCCACCAAAGACCCTCGTGTCGGAAGGGATGGGTGGGACGATCCGGGTAAAGCCTACAGTTCTGGATATCTGTAGCGCGTCCAACGAGAACCTCAACAACGGGCTACCTCAGGAGATGTCTAGTTTTGGGAGTCCGTCGCCCACCTCCACGCCCTCGCCCTCTTGGGGGCACGTCACACCACCTTCTCTGCCCAAGGATGCCAACCAGAACCCGGAAAGCCCACGGCACAGCAAGCCCCCTGGCGTAGCCGATCTGGTGCTCCTACACAACAACAAGAACCATCACCACAGCAACAGCTCCAAGTTACCGCATATGCGGGCGGACTCTCCGCCTCCCAGGGCCCCCAACAACCACCATATAAACCACAGCAAGGCCCATGACACGGACcggactctctcctctcctggggACTCCCCGGGGGAGGGGTCAGAGAAGCTCCAGAACGACTCGGAGTCTGGAGATGACCTGAGCAGCAGCTCTACTGAACACATGCAGACGACGTCTCCGATAGGGCAAGGCCGGCCCGAGTCCCCTATCTACACCAACCTCCAGGAGCTGAAGATCTCCCAGTCCAGCCTGCCCACCCTCCCCTCCAGCACCCCACTGCACATCCTTGGGGACTGGGAGACCCACAAGGACCTCACCGGTAGACACTTCTACTATAACAGAGCCACCGGGGAGCGCACGTGGAAACCGCCCCGTGCACGGGATGCTAGTGGCAGTACCAGTAGTAGTCGGGGAGACCCCCATGGCatgggagagatggagCCCCTGTCTTCCGAGGAGAACTGTCACAGCAGCACATactccagtcagtcagacagtcagtatgGATCTCCCCCTAGAGGCTGGTCAGAGGAACTGGATGTACACGGACACACCCTCTATGTCTGTGAACATACTCATGAGAAGTGGATAAAGCACGTGGACGAGCAGGGGAGGCCGTACTACTACAGCTCAGACGGCTCCAGGTCTGAATGGGAACTACCCAAATACAATGTGTCCCCTCAGCCAGGTGATCCCCCCAAGAGTCGTAGCCTGGAGAGGAAACTGTCAGACCCCATTGTCCTGACCAAGTGGAGACACAGCACCTACGTACTAGACCTCAGCGACAAGGAGTGTGGGCCTACATTCCCCAAGCTGAGTTCTCCTGACTTTGACTCCTGCCCCTCATCTCCCAAGCACCCCTCAATCCCCTCTGAGAAGTGTGGAGTCCTCAACGTCACCAAAAtaactgagaatggcaaaaaagTCAGAAAGAACTGGACATCGTCGTGGACGGTGCTACAGGGCTCCTCGCTGCTCTTCGCTAAAGGACAGGGGAGTGGCACCAGCTGGTCCTACTACCGTAGTGGCTCCATCCCTGAGCTGCTGCTCACTCTGCTGGCCAACTGGAAGCGTTCGGTCAAGCCTCGCCCAGCTGTCTCCTATGTCCACTCTGTCCATGAGCGTTCCAAGGCTGCcactAAGTTTGGGGGTAACCAGTCGAAGCCGGAATTCACTGTGGATCTCAGAGGGGGGTCAGTTGATTGGGCCTCGAAGGATAAGTCCAGCAAGAAGCACGTCATTGAGCTGAAGACCCATCAGGGGACAGAGCTGCTGATCCAATCAGAGATCGACAGCGTCATCAACGACTGGTACCGAGTCCTGACAGACACCATCAGTACACATgcATGGGAGTCAGATGAAGCCTTAGAGGAAGACATGCCTGAGTCCCCCGGTGCAGAAAAACAAGACAAGGAGAAAGACCACAGAGACTCCAAGAAAAACAGAGCGATGAAGACATCTGTGAGTATGGACTCCTCGGACCAGAAGAAGACCAGAGTAAAGCTGAAGAAGTTCCTAACCCGCCGACCTACCTACCAGGCCGTCAGAGACAAGGGCTACATTAAAGACCAGGTGTTTGGCTGCAGCCTGAGCAGCCTGTGTCAGAGGGAGAACACTTCGGTGCCCACTTTCGTCACCATGTGCATCGACCACGTGGAAAACACAGGTCTGAGTATAGATGGGATATACAGAGTGAGTGGAAACCTAGCTGTTATACAGAAGCTGCGCTTTGCTGTTAATCACGATGAGAAGGTAGAGCTGGATGACAGTAAGTGGGAAGACATCCACGTCACTACAGGAGCCCTGAAGATGTTATTCAGAGAGCTGCCTGAGCCTGTTTTCACCTACGACTCTTTCAACGACTTTATCAACGCCATCAAATGCTCAGACTACAAGCAGCGGGTGAATATGATAAAAGACTTAATCAAGCATTTGCCAAAACCAAATCACGACACAATGCAATGCCTCTTCAAGCATCTCAGAAGggtgaTTGATCATGGGGAGGCCAACCGTATGACGACCCAGAGCGTAGCGATCGTTTTCGGCCCCACCCTGCTCAGACCTGAGACGGAGACGGGAAACATCGCTGTTCACATGGTCTATCAGAACCAGATTGTTGAGCTCATTTTACTGGAGTATGAGAACATATTCAGCAGGTAGAAAATAAACACCTAAGAACAACACCTGAGGTAAACTCCTGTGGAAGAGGATGGTCTGATTGAGTGGTCGGACTCACCCAATACCGCTTATTTTTGTGACTGAAACATTGCTACTGTGGACCCAGCAatttaaagaaagaaaaacaaaaatgtaattaTTGTTCGTTGATAATAAGATTAATAAAGGAAACTAGTGAATGACTTTGCACTTAACATTTTGAGAGAGATGAGTAATGATGTAAATAAATACAGATGTCATTCACTTTGGTTCCCATTCCTGCTGTGAGTAgcagggcggtgcagttgcttcAGGGGAGAGTGTTGGTTGGTTTGTTGGTTGGTGAGCTGGCTGGATCTAGGACCTGGCATGGCATTGACGGCGGACGGAGTGCAGTGTGAATGGTGTGGATGGATCTCCCTCCGTGTGTGACGTGATCCAGTGGATTTGAGTATACAGGGTATAACTGTGTTCTACACTGGATTCCTATGGCCAGTATTAAGTACATACTATATACAACAAGAGCTTGGTGAATAAGACGTTCATTGTTTTGGACTGGAGTGAAACAGAAGAAGAGGATTGTGGGATACATTGATGTGGCGTAAAAGAAACCGCTGGAGTGACTTCCGGCTTTCtctgatgacatcacaacacagGAAGCACAACTCAATCCAGATGATTCAAACAACTAACCACCCACTGAAtaactggctggctgggtggtcTGATCTCCCTCTGTCAAGTCAATGGAAGCCCATATCCTACTACCGTGTGGTAGAATATAGACCATGCTTGGTCGTCTGTATAAAGACTACTCTCATTGCTTTGTGTTGGAATAATAATAAGATGAACCTATGAACTGGATATTCTCAGTGTTGTGGAACATTGACTGTTGACTTGACCTCTGAATTTTGTGAAGTACAATGTAAAGCCTCAGTTGTGTGGATACAGAATCAGTATTAAATATGGGGGCTCTCTGACGGGACCCCAAAATTATGTATGGGGTCTCTCGGAGGGGACCCCTGGATCAACTGGATTGGACATAGTCATGTGTATTAGCTATATTTCCCCGACTTTATAATGAAAACATTCACCACAATCAGATCTGGGAACTGCATTTTAGCACTCCTTtccctttataatacactacttttgaccagagtctttGACCAGTCAAAAGTAAGGCAatttacagggaatagggtgcaattttggACGCGAACAGGTCACCCTACCTCCCTCGCTAGAACTGGAGCCCCGCCCCTTCTTCCAGATCTACCCTTTGACCCTAGTGCAATCATCAATAGTGGTCAGTCAGTATGTCACATGACTGGTTTTGGGAAGCATCAAAACAAACCTGTGTTTGGGGGATAATACCGTAAATGAACTTGCTATATCTGAAGACtggctgcatcctaaatggcttcctattccctatgcataggccctggtcaaaattagtgcactatatagggaatagggtgcctgccatttgggatgcacataaGATCTTCCCTAATGTGTACAGATAAAGAACAGATGTGTGTTATTGTCTAGTCTAACGTGCTTTGTATGGTAGGCCTCTGCTAGTGAAAGGCCTTCATTATAAGTGTAAAAGTGTTGGCTTTTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1468567 lncRNA upstream 184173 35712811 ~ 35713103 (+) True G1286564
TU1468566 lncRNA upstream 185262 35711621 ~ 35712014 (+) True G1286563
TU1468555 lncRNA upstream 192691 35703977 ~ 35704585 (+) True G1286552
TU1468536 lncRNA upstream 212721 35684287 ~ 35684555 (+) True G1286533
TU1468529 lncRNA upstream 218999 35677878 ~ 35678277 (+) True G1286526
TU1468672 lncRNA downstream 7450 35995699 ~ 35996167 (+) True G1286651
TU1468668 lncRNA downstream 47334 36035583 ~ 36040764 (+) True G1286648
TU1469118 lncRNA downstream 273441 36261690 ~ 36264080 (+) True LOC110490024
TU1469319 lncRNA downstream 317709 36305958 ~ 36306184 (+) True G1287264
TU1469332 lncRNA downstream 326069 36314318 ~ 36315509 (+) True G1287276
XM_021563100.2 mRNA upstream 2169 35847886 ~ 35895107 (+) True LOC110490020
XM_021563098.2 mRNA upstream 81661 35736382 ~ 35815615 (+) False LOC110490019
XM_021563097.2 mRNA upstream 81661 35765097 ~ 35815615 (+) False LOC110490019
XM_021563099.2 mRNA upstream 81661 35785698 ~ 35815615 (+) True LOC110490019
XR_005036311.1 mRNA upstream 277756 35616824 ~ 35619520 (+) True LOC118938916
XM_021563110.2 mRNA downstream 178258 36166507 ~ 36264082 (+) False LOC110490024
XM_036944311.1 mRNA downstream 178855 36167104 ~ 36264082 (+) False LOC110490024
XM_021563113.2 mRNA downstream 635207 36623456 ~ 36635732 (+) False LOC110490026
XR_002468760.2 mRNA downstream 816757 36805006 ~ 36805955 (+) True LOC110490839
XM_021563120.2 mRNA downstream 880964 36869213 ~ 36901645 (+) False LOC110490032
TU1466288 other upstream 1785005 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 3199240 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 3900763 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 4949946 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 5489259 30395867 ~ 30408017 (+) False htr5ab
TU1468667 other downstream 47334 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 520829 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 2195187 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 2606631 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 2606631 38594880 ~ 38600241 (+) True G1289710

Expression Profile