RNA id: XM_036944311.1


Basic Information

Item Value
RNA id XM_036944311.1
length 6998
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110490024
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36166507 ~ 36264082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAATATAGATTGATGTTCTGAAATGAGTGAATATGTGTATAAGGTTAATTCCTTCAATGCACGTTCGAGAAAAAATAACTGTTTCTGTCGCTTTTCTCTTTGTCGTACCGTGGCAGGTAGCGCGAGCCATGACAAGACACTGTTGCTACATTGAGGGCTCGGGCTTTAGGAAATGTTTTTACTGTGGAAATTGTGCTGTTCTGCTGCTTCATATTATATTCAAATGCATGATGTTATGTTTATGTAGACTACACATCTATTTTCTCACTACTTTTATTTGTAAAAGATGTGTAGGCGCGATGCACGCGTTTTCACAATTCAATTGGTTTTCACAATGCAAGTGTGCATTTACAAATCATTCGAAAAGTTATTGCTAAGATAAGTAGACAATATGCAGAACAAGGTAAAGTAGCTATAATTAATAAATGCAAATGAACTTCGAACGAAAAACGTTGTTTCTGTAGCATGCATTGTTGGGTAACGTTTCAGAGAATGGGAAGAATATATCAAGCGCTGTTTGTGTAAACAAGGCACAGCCTATATAAACAAGGCACAGCCTATATAAGGAGTGTGGGTTTACATCCACAGTCCTGCGCTGGGAATTCTGATTTTACACACTCAAGGTTTGGTGGCGTGGGAGCGAAACTTGAAGTTGGAGCCAATCTGTTCATCCTGAGTTTCTATACTTAAAtaattgttattttgtttttgtttgtgcttttgtgtgtgtggttaaaaGGCTGCATTGTAGGGTCGTCCGGGTAGCCAGTGCGTTTCTCTGAATagttattttttttctttctcgccagtaatttaatcaatttaataGTGGAAGGCTTTTATCTGGAAATCATGTTAAACCCTATTTGACTTGCAAAGATCATGATCTTCGGGTTGCTTGTCTTTGCCTTGTGCGTTTTATTAGTCTCGTGTGTTCTCATTTTATTTAGTTAAGGGACTTGTGACTTTTGTTTCAACATCGGAGGTGGTAGTTTTTCACACATAGGAATAACGCTTGTGTTGTAGGCTGTTTGGAGGCATATGGGTTTTTCTCCTGTAGGCTAGCTGACGACATGCGTAGTCTACTTTCAGCCTCGTGAGAACAGTCACCGGCACAGCATCGCAAGTGGTCGAGCCACCCAGCACAGCTTGCAGGAACTGAGAACATGTTTACCTGATCCGGAAAACGGGTATTTTGGTCTTTGTAAACACCCCTCTGTCAAAACATAAAAACAAACCAGCAGTCTGATTTCTGGGGACTGAATACGCTGTTAGATTCCCGTGAGACGATTCCTTCTCTATCTTCCCTTTCCAAAGCAGCGGAGAGCGGTCCCTGTGCGGTGCGCCGCAACAAATGGCAACTTGTGCAGTAACCAACTACAGTAATGTAGTGAAGGCCCCAGGCTCAGATTCAGATGATGAGGACAAGCTGCACATCGTGGAGGAGGACGGGAGTCTGGCAGACGGGGCTGACTGTGACAGCAACGTACCCAGTGAAGATCACAACGGAGACCGCTGGGATGAAGTGAGGGAGGAGTGTGGTTCTGATGGGGAGGATGACGGCAGTACAGATGCTCTGGTGGAGGAGATACTGCAGCAGGGAGACACGACCATCATCTACCCAGAAGCCCCTGAGGACGAGCCCCGCCAGGGGACGCCCGAGGCCAGCGGACATGACGAGAAtgGCACTCCAGATGCGTTCTCACAGCTCCTCACCTGTCCCTACTGCTCCCGCGGCTACAAGCGCTACACGTCCCTGAAGGAGCACATCAAGCTGCGCCACGAGAAGAGCGAGGACAACTTCAGCTGCTCCCAGTGCAGCTACACCTTCGCCTACCGCACTCAGCTGGAGAGACACATGAGTGCCCACAAAGCTGGCAGAGACCAGAGGCACATGACACAGTCGGGGGGCAACCGAAAATTCAAGTGCACTGAATGTGAAAAAGCATTTAAGTACAAGCATCACCTGAAGGAGCACCTACGCATCCACAGCGgagagaagccatacgAGTGCTCCAACTGTAAGAAGCGTTTCTCCCACTCCGGTTCCTACAGCTCCCACATCAGCAGTAAGAAGTGCATCGGCGTGATCTCAGCAGTCAACGGCCGACCCCTGCCCGCCAAGGCCTCCCAATGCCCATCCCCAGCCATGCCCGCCTCGCCCTCCTCCACCACACGCACCCAGACCCGAGACAAACCCTTGCAGGAACAGCTACCCCTCAACCAGATCAAGAGCGAGCCAATGGACTACGAGTACAAGCCCATGGTAGTGTCTCCAGCAGCGGGGGCAACAGGAGTGAACGGTCACGGAGGAGGGGTGTTCAACGGGGGTGCGGCTGCCCCACTGCAGAGCGCGGTGCAGGCGATGATGCTCCCCACCATGGGCCTGGTCTCTCCGATCAGCATCAACCTGGCAGACCTACAGAACGTCTTGAAGGTGgcggtggacagtaacatgatcAGACAGATGTTGGAGAACAATGCTAAGTCGGCGGGGACTGGCATGGGGGCGACAGGTGTTCCTCACCAGCAGCTCATCTCAGCCATCAGTCTGCCCATTATGGGTCAGGACGGCAACGCCACCAAGATCATCATCAACTACAGCCTGGACCCCAGCCAGACACAGACCCAGCTCACTGCCCAGAACCTGAAAAAGGAGCCCCCGACCCTGGCTACAACACCAGGCCAGGCTGCCACAGAGCCCTCCAGCAAGACCCAGCAGAAACTCCCAGAGGACCTGACAGTTAGCAGGCCCCCCAGGAGCaaagaggagaagatggaagaggAGACTACTAAGACCTGCCTGCTTTGTAATGAGTGCCCCAATGGTCTGGACGCTCTCCACACACTCAAGCACTGTAAGAAAGCCTCGGGCCTCAGGATCAATGGGGACAAATCAAAGTCTGCCATCGATTCATTATTGTCTGAGGGGTTCGGGGATCAGCCCAAGAACCTTCTGTCCCTCCTCAAGGCCTACTTCTCCTTAAATGTTGAGCCCACCAAGGAGGAGCTCAGCAAGATCTCCGACTCGGTCAGCCTGCCTGCCGACGTAGTCAAGAAGTGGTTTGATAAGATGCAGAGTGGTCAGGTCTCACTAGGGGCCCCGACCCCTCCGTCTGAGGAAGAAGGGCCCTTGTCTGAGTGTCATGGGGCCATTGTTGTGTCCCCTAAAGTAAGATCAGAGCAGAACACAGAGAGCCCCACCCTGATGCAGTCCAGCCCAGCTGAGGCCACTCCGGCTGAGGTTAACGGCTCTGGGCCCTGCCCGGCCTCCCCTACACCACTAAACCTGACCACCGGGGGGGCCgtcccagccaaaccctcctccTCAGACAGCACGGAGGTCCCCCTGGACCTGTCGCTACCAAAGCCCCTCCGAGAGGAGACCGCTGCCACCGCGGCCTCTTACCAAGCCACTGTTTACTCCCATCAGGACGAACCCCTGAACTTGACGAAGACTTGCACAACCAAGAAAGAACTTCCGCTCTCTGCCGGCGCCGCAGGCCACCACATGACTAGCCAAACCTTGTCCTTTTACACCGCCGGCCCACAAAGTGCCAACCCCATCAGCATCATGACCACTCAGCTGCCCAGCGGGACCATCTATGCCATCACTGATCAGGGCAGCACGGGTGTGCCCTGCCTCCGGGCGCTCACCACCAATAACAACCAGACTATCCTCATCCCACAGTTGGCCTACACCTATACCACTACAGCTACAGCCAGCAGCCctgcagggacagagacacaggagAAGACCACACTGCAGATCAACGGCATCAAGGAGGAGCGTCAGGACACAAGCTCAGAGGGCGTGTATACCATGGAGGAGCAGAATGACTCAGACACCACCCCTTCCAGGAATAAGATGAGGAAGACGGAGAGTGGGTTGTACGCCTGCGACCTGTGTGACAAGATCTTCCAGAAGAGCAGCTCTCTGCTCCGACATAAATACGAACACACAGGCAAGAGACCCCACGAGTGTGGCATCTGCAGGAAGGCCTTCAAACACAAGCACCACTTGATAGAACACATGCGTCTCCACTCCGGAGAGAAACCCTACCAGTGCGACAAGTGTGGCAAGCGCTTCTCTCACTCAGGCTCTTACTCCCAGCACATGAACCACCGCTACTCCTATTGCAAGAAGGAGGCGCAGGGAGGTCAGGGAGGTGTAGGGGAGGAAGTGCTGGAGATTCAGAGCCCCGTGGGGTTGGGCCTGGGAGGGGAGCAGCCGGAGCAGTCAGACAGCAggcccacctcctcccctccctcccacctggaCTCGGACGAGCGAGGGAGCAGcaccagagaggaggaggaggagagtgatgaggAGGACATGGAGACAGTGGCAGGGGAGGCGGTGGAGGGAGATCCGGACAGCGTTCTGGATATGGATGATATACAAGTGGTACGGAtaggagatgagggaggggaagaggaggaggaggaggaggagagagaggaggagggggaagacaCTGGTCATGAGGGGGGAGAGAATGCAGAAGAGGAAGAGCAAGGAGTGAAGAGAATAGTGGTagggggtgaagaggaggaaggagaagaagaagaagaggaggggttaGTGGGGGTTGAAGTAAAGGAAGAGCAGGAAGAAAAGGAGGTTACAGGGGAAAAGGCACATACAAGGCaagaggaggtgaaggagaaccgtgagaaagaggaggaacatggaggagagaaggaagtggaggaggagcaGTCAGAGCAGGCtcaggaggaggtgaaggaggagacAATGGACACAGAGGAAGCGGTGACCTCAGAGGAGAAGGAAGAATCAGGGGAGGTCATGAAAGAGAATGAAGGTGAAACAAACGGGAACACTGTTTCAGAAGACTAGAACCAAACACCGACCAGAGCAAAAGGagataaacaaaataaaacaggGAGGAAGCAGACCTGTGTTTCTTCCTCTATGAAATGGAAGGATCTGTTTTCTCCCCATGACGTTGGGGGAAAGGAAAGGGATAACGTTTGGGTTGCTCTGACGGATGCTGCATTTCAGTTCACTACTGTGTATGAATCCAGGTGTGCCTGAAAAAAATACTAGTGACTTATTCCACAGAAGGAGAAACCATTTTCAGTGTtagaaaatgtatttgtaaaaatCAAAAACAAAGTTTAAAGACAAAAAATGCATCATACGGACTTTGTAAGCTAGAACCGACACGTTTTGGATAATGTTTTATTACTAAAACAACCTTGGGTCATTTCTTTTTATCAGTGTTATCATTCATATTTTAACCTTTAAAACGCTGTACAGTTGGGAGAGATTTCTATACCTTTTTATTGCCAATgaacaaaaaaaatctgtattttaTTAAGTTGGAGGGGAGAAAAAAGATCCTGTGCACTACAAGTGGCTTGGTTTACTTATGGCTCTAACAGTTATGTGTTGTCTACCTTTCAGTATTATCGCACTAGACCTACAGCATACAGCATCAGCACGTTAGCTGATAATGTTAGCATACCTTTTGTTTGTTTTACATGGATTGTGAGCCTTAAAGATAAACTGTTGTACGGTGATGAAGTTCAGCCATGATGTTCCAGTAGTTGATTATTACCTTATAGATGAAGAAGACGTCAAGGGGAGTATGGAAGGAGGTACATAAGTCTGCAATGACACATTGTTCtaattgttttgttagtttgtttgttcATTTAATAAATCATTACTGAATCAGATCAAGCAGAAGAATAAAGAAGAACATTCATGATCTAGGCCTAGTAAGTAGAGATCATTTGACCCTTAAGCCCTGGACCCTATTCCCACTCCCAGCCTTATgcaaaacaattattttttttttaaatacaccatGCATATCAAAAGTGCCATTGCATACTGCTATTTCTCCTTAGCAGCTGTTGTCAGGTTGTTTCAAGGCCCAGATTTGATAGTAGCTCAAACATGTCAACTCTTTCAGCTGATCTACTGTTTTTGGCTCACTACCACTAGTCCTGATGTTGTAGAAGATAGCATTACCATGACTTATAATTTAGACCGGAATTCTATATTTGAGAAAAAAATCTGCCTCTTTTATAATCAGAGCAATCAATGGCAAAAAGGACTTGTAACGGGATGATGAAACATGATTTTGAAGTATTTCCTGCCTTGAAATGTATCCTTTTCCCCAGTCCAGTCCCAGTGCACTTGTTTAACACttgtgaaactctctctctctcttcaggtaACAAAAGTAGGCAAATATGATACCAGAATGGTTATTCAGACAATATTTTTTACCTGTCAGTATtattttgttgttgatgtttttttgtatatgttaaatgtgtgtactgtatgttttcAGCAATGTCGGTATTATTACCATTCCCAATGATATGGGTTATTTGTTTAGTTCTAGAAAACTTTTGTATTTATGTGTCttattttttatatttctttATGGTTATTTATTACAGTGTAGTGTACAATACTGTAGTTTGTATTAATACAATAATATATTTTAGTATGAAAATCATTTGAAAGGTAAAATGACTACAACAAAGCTGGAACATAAAAAAAGTCTGGCATTTTGAAGTATGTTttagaacaaaaataaaaatgtactgcTATCTCAAGTTGTCAACACACCCCACAAGCAGGAAATTGGAACATGTCACCTTCCTGCATCCATTAATTCTCATGTTAGTTTTTACCTTTTGCCCACTTTAATATGAAGCTACTGAAACTCTTTGAGAACTAACTGTATGTCTAATAGCATGAGTGTGCTGTTGTATTGACAGATGATCCTTAACCATGAATCTGTCCTTTTGCCAAGCCAAAATAATATTGAccttttttgttttatttgtgcCAATTTGTTATTTTGTATGTCTGCTACGTCAAGGCCACAACCTCTTTTTATATGTCCCTGTTTTAATCCACATTCATTTTTATAGTGATAGTTTGtgcttttgttttttttatgactCCCCATctcacaataaaatacatcaattACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1468668 lncRNA upstream 126340 36035583 ~ 36040764 (+) True G1286648
TU1468672 lncRNA upstream 170937 35995699 ~ 35996167 (+) True G1286651
TU1468629 lncRNA upstream 234970 35830857 ~ 35932134 (+) True G1286624
TU1468567 lncRNA upstream 454001 35712811 ~ 35713103 (+) True G1286564
TU1468566 lncRNA upstream 455090 35711621 ~ 35712014 (+) True G1286563
TU1469319 lncRNA downstream 41876 36305958 ~ 36306184 (+) True G1287264
TU1469332 lncRNA downstream 50236 36314318 ~ 36315509 (+) True G1287276
TU1469342 lncRNA downstream 61056 36325138 ~ 36328721 (+) True G1287285
TU1469567 lncRNA downstream 232398 36496480 ~ 36496682 (+) True G1287487
TU1469574 lncRNA downstream 236519 36500601 ~ 36503020 (+) True G1287492
XM_021563102.2 mRNA upstream 178855 35897276 ~ 35988249 (+) False LOC110490021
XM_021563101.2 mRNA upstream 180288 35897274 ~ 35986816 (+) False LOC110490021
XM_021563113.2 mRNA downstream 359374 36623456 ~ 36635732 (+) False LOC110490026
XR_002468760.2 mRNA downstream 540924 36805006 ~ 36805955 (+) True LOC110490839
XM_021563120.2 mRNA downstream 605131 36869213 ~ 36901645 (+) False LOC110490032
XM_036944325.1 mRNA downstream 605131 36869213 ~ 36901645 (+) False LOC110490032
XM_021563122.2 mRNA downstream 605132 36869214 ~ 36901645 (+) False LOC110490032
TU1468667 other upstream 73708 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 2054833 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 3469068 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 4170591 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 5219774 30944171 ~ 30947330 (+) True G1279833
TU1469571 other downstream 244996 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 1919354 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 2330798 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 2330798 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 2772923 39037005 ~ 39037659 (+) False G1290549

Expression Profile