RNA id: XR_002468760.2



Basic Information


Item Value
RNA id XR_002468760.2
length 728
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110490839
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36805006 ~ 36805955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGACGAGGCCAAATTCATCCGTACCTATAACGACTTTGTGGACTACCGGAGTGACCCCTCCAAGCGGAATGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATGTGAACAtgctagatgtcctctttgagCTGGTGCTGTTTGGGATGATGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCGTGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCACTGCTGCCAACATGGAGCCAGAGGCTGATAGATACCTGCTGCTGCTCAATGTAAGAGTCAAGAGGTTACTTCCTGTTTACTTCCATATTCATGGTTAACCAGGTCCCAATGCCATTTTAGGGGGAGTATTTctaattgtctctctctcctcttgataAGCTAGTAACTCAGGACCATTTTCtatgtgttgtgtggtgttctcTTCAGGGCGGGCTGATGGCTCTCCTAGATGACATGTTTGGCCAGCAGCTGGCCTGGTACtttaacccagagtctctggtcaCTGAGCTCTCCAGCCTCCTGGAGTACCACTTGGAGAACCTCATGGCCAGCATGTAGTCCTACTGCAGGGACCAtactcctttctccttctctctctcttttgaaggAATTGAGGACTTGAAGTGCTTTGTTGAACCCTGATTAGTTAACACCCATTAATTTAATGTattctcttgttttctctccccACAGGATTATTGTGACACTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1469763 lncRNA upstream 23381 36775537 ~ 36781625 (+) True G1287656
TU1469754 lncRNA upstream 39491 36762060 ~ 36765515 (+) True G1287651
TU1469757 lncRNA upstream 40350 36762478 ~ 36764656 (+) False G1287652
TU1469755 lncRNA upstream 40350 36763238 ~ 36764656 (+) True G1287652
TU1469756 lncRNA upstream 41390 36762478 ~ 36763616 (+) False G1287652
TU1469870 lncRNA downstream 23080 36829035 ~ 36829298 (+) True G1287746
TU1469893 lncRNA downstream 37978 36843933 ~ 36844141 (+) True G1287764
TU1469910 lncRNA downstream 62592 36868547 ~ 36868890 (+) True G1287781
TU1469919 lncRNA downstream 88544 36894499 ~ 36894905 (+) True G1287790
TU1469924 lncRNA downstream 104801 36910756 ~ 36911107 (+) True G1287795
XM_021563113.2 mRNA upstream 169274 36623456 ~ 36635732 (+) False LOC110490026
XM_021563110.2 mRNA upstream 540924 36166507 ~ 36264082 (+) False LOC110490024
XM_036944311.1 mRNA upstream 540924 36167104 ~ 36264082 (+) False LOC110490024
XM_021563102.2 mRNA upstream 816757 35897276 ~ 35988249 (+) False LOC110490021
XM_021563104.2 mRNA upstream 818190 35897275 ~ 35986816 (+) False LOC110490021
XM_021563120.2 mRNA downstream 63258 36869213 ~ 36901645 (+) False LOC110490032
XM_036944325.1 mRNA downstream 63258 36869213 ~ 36901645 (+) False LOC110490032
XM_021563122.2 mRNA downstream 63259 36869214 ~ 36901645 (+) False LOC110490032
XM_021563123.2 mRNA downstream 63259 36869214 ~ 36901645 (+) False LOC110490032
XM_021563125.2 mRNA downstream 63259 36869214 ~ 36901645 (+) False LOC110490032
TU1469571 other upstream 294494 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 711610 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 2692735 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 4106970 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 4808493 31996167 ~ 31996513 (+) True G1281462
TU1471681 other downstream 1377481 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 1788925 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 1788925 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 2231050 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 2320317 39126272 ~ 39127009 (+) True G1290614

Expression Profile