RNA id: XM_036944325.1


Basic Information

Item Value
RNA id XM_036944325.1
length 2759
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110490032
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36869213 ~ 36902064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAAATAGGGGTCTTACTTTACAATGTTGTTCTGATAAGTCTTTGAATCGACGCCGTCTGTAATTGTGACTTTTGTTGGTTATTAATATTTTAATTGTGCACGGTACAAATTTAATTTGTCGAATATGAGTATACTGAATACTCATGACTACTACATCCTTAACGACTCCATTACAGTACACCTACAGCTGATACAATGGTATATTCCATAAGCCTGAAGAAGAAGCCGTACGATGTCCTTGAAGCCGCGGGTGGTGGACTTTGATGAAACATGGAACAAGCTACTGACGACAATCAAGGCTGTGGTGATGCTTGATTATGTGGAGAGGGCCACATGGAATGACAGATTTTCTGACATCTATGCCTTGTGTGTTGCATACCCAGAGCCTTTGGGTGAAAGATTGTACACAGAGACCAAGGTATTCTTGGAGAACCATGTCAGACAGTTGTACAAGAAAGTTCTGGAGTCTGAGGAGAAGGTTTTAGTGATGTACCACAGATACTGGGAGGAGTACAGCAAGGGAGCAGATTACATGGATTGCTTGTACAGGTACCTCAACACACAGTTCATCAAGAAGAACAAACTGACAGAGGCAGACTTGCAGTATGGCTACGGAGGGGTTGACATGAACGAACCACTTATGGAGATAGGAGAGCTAGCACTTGACATGTGGAGGAAGCTGATGATCGAGCCACTGCAAGCTGTCCTGATCCGGATGCTGCTGAACGAAATCAAAAATGACCGGTGTGGCGAAGACCCAAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTGAAGTTTTATCAGGAAATCTTCGAAGGGCCATTTCTGACGAAAACGGGAGAGTATTACAAACAGGAAGCTTCCAATTTACTGCAAGAGTCCAACTGCTCACAGTATATGGAAAAGGTTTTAGGAAGGTTGAAAGATGAGGAGGTGCGATGTCGGAAGTACCTGCACCCCAGCTCATACGCCAAAGTCATCCATGAATGCCAGCAGAGGATGGTGGCGGACCACCTGCAGTTTCTCCACGGGGAGTGTCAGAATATCATCCGCCAGGAGAAGAGAGACGGTCAGTCTGGTTACAGGAGTGACGACATGGCTAACATGTACACCCTGCTGAGAGCCGTGTCCAGCGGCTTACCCCACATGATCCAGGAGCTCCAGATCCATATCCACGACGAGGGCCTCCGGGCCACCAGTAACCTCTCTCAGGAAAACATGCCAACCCTGTTTGTGGAGTCCGTGTTAGAGGTTCACAGTAAATTTGTTCAGCTCATTAACACAGTCCTGAATGGGGATCAGCACTTCATGAGCGCACTTGATAAGGCTTTGACTTCAGTGGTTAACTACAGGGAGCCCAAATCCATCTGCAAAGCACCTGAACTGCTCGCTAAGTATTGTGACAATCTGCTGAAGAAGTCTGCAAAGGGAATGACAGAGAATGAGGTGGAGGACAAGCTGACTAGCTTCATCACCGTGTTCAAGTACATAGACGACAAGGACGTTTTTCAAAAGTTTTATGCAAGAATGTTAGCAAAGAGGTTAATACATGGGCTGTCCTTGTCCATGGACTCAGAGGAAGCCATGATCAACAAACTAAAGCAAGCATGCGGCTACGAGTTCACGAGCAAGCTCCACAGAATGTACACAGACATGAGCGTCAGCGCAGACCTGAATAACAAATTCAACAACTTCATCAAGACCCAGGAATCACCGGTTGACCTGGGAATCAGCTTCCAGATCTATGTATTACAGGCAGGAGCCTGGCCCCTCACACACATCTCTTCCTCCACCTTTGCCATCCCACAGGAGCTGGAGAAGAGTGTACAGATGTTTGAGTTGTTCTATAATCAGCACTTCAGTGGGAGGAAGTTGACTTGGCTGCACTATCTCTGCACAGGTGAGGTGAAGATGAACTATCTCTCCAAGCCCTATGTTGCCATGGTGACCACCTACCAGATGGCGGTGCTGCTGGCCTTCAACAACAGTGAGACGGTGGGCTACAAGGAGCTCCAAGACTCCACCCAGATGAACGAGAAGGAGCTTCAGAAGACCATCAAGTCTCTGCTGGACGTCAAGATGCTTAACCACGACTCTcaaaaggtcaggggtcagataTCAGCAGCCACAGAATCACCCGGAGACCCAGAGTCAGCAGTGTCTTCTTTAGTGGAGGAAATCGACACTGAGTCCACATTTTCACTAAATATGAGTTTCACCAGTAAAAGAACAAAGTTCAAGATCACAACGTCAATGCAGAAAGACACACCACAGGAGATGGAGCAGACGAGGAGTGCAGTGGACGAGGACCGCAAAATGTATTTACAAGCTGCTATAGTGAGAATCATGAAGGCACGCAAAGTGCTCAGACACAACGCCCTCATACAGGAGGTCATCAACCAGTCCAAAGCCAGATTTAACCCCAGTATCAGCATGATCAAGAAGTGCATTGAGGTGCTCATTGACAAGCAGTACATTGAGCGGAGCCAGAGCTCTGCAGACGAGTACAGCTATGTGGCATAATGGAGGAATAATGGCGTATAAGGCCCCCTACCCCAACCAACCGCAGGTTAAGCAAAGAACGACAGAGACCATTCTTCTTCATATATTTTTGGGCTGTTGCTGTCTCACGTGCTCccgtagggagggagggatgaagcaGGACTATGTGCCTCCATCTTGGAAACAAGCAAAACAAGTCACCCCAGACAGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1469910 lncRNA upstream 323 36868547 ~ 36868890 (+) True G1287781
TU1469893 lncRNA upstream 25072 36843933 ~ 36844141 (+) True G1287764
TU1469870 lncRNA upstream 39915 36829035 ~ 36829298 (+) True G1287746
TU1469763 lncRNA upstream 87588 36775537 ~ 36781625 (+) True G1287656
TU1469755 lncRNA upstream 104557 36763238 ~ 36764656 (+) True G1287652
TU1469924 lncRNA downstream 9111 36910756 ~ 36911107 (+) True G1287795
TU1470026 lncRNA downstream 52734 36954379 ~ 36954640 (+) True G1287891
TU1470169 lncRNA downstream 152951 37054596 ~ 37054801 (+) True G1288031
TU1470442 lncRNA downstream 359374 37261019 ~ 37261726 (+) True G1288296
TU1470465 lncRNA downstream 375876 37277521 ~ 37277920 (+) True G1288319
XR_002468760.2 mRNA upstream 63258 36805006 ~ 36805955 (+) True LOC110490839
XM_021563113.2 mRNA upstream 233481 36623456 ~ 36635732 (+) False LOC110490026
XM_021563110.2 mRNA upstream 605131 36166507 ~ 36264082 (+) False LOC110490024
XM_036944311.1 mRNA upstream 605131 36167104 ~ 36264082 (+) False LOC110490024
XM_021563105.2 mRNA upstream 882397 35897277 ~ 35986816 (+) True LOC110490021
XM_036944326.1 mRNA downstream 945621 37847266 ~ 37957961 (+) False nrp1a
XM_036944329.1 mRNA downstream 945621 37847266 ~ 37957961 (+) False nrp1a
XM_036944330.1 mRNA downstream 945621 37847266 ~ 37957961 (+) False nrp1a
XR_005036088.1 mRNA downstream 947133 37848778 ~ 37954543 (+) False nrp1a
XM_036944331.1 mRNA downstream 947137 37848782 ~ 37957961 (+) False nrp1a
TU1469571 other upstream 358701 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 775817 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 2756942 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 4171177 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 4872700 31996167 ~ 31996513 (+) True G1281462
TU1471681 other downstream 1281791 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 1693235 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 1693235 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 2135360 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 2224627 39126272 ~ 39127009 (+) True G1290614

Expression Profile