RNA id: XM_036944343.1


Basic Information

Item Value
RNA id XM_036944343.1
length 1829
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110490039
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38576635 ~ 38580756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACTCAAGAGCCTCTCCCCGAAGTCGACCAGTGAAGTGTTGATGCGAGAGTGAGCAACCATTTATTCACATTTCGTTGGTTTCGGATTATAAATGTTATGCACAACCATCATCGCGGGTGTCTGTGAAGTCGGAGTGGACAAGTAGTTACGAGATTTATCACTTTTTCTACTCatggaatgtattttttttcttattttcagCAGCTATAAACATTTCGTTTTTTTCCTGCAGAGCAATCCAAGTAAGGTAAAAGTCGGATTTTAGGGCTATTTCTCTTGTAACCTAGTTTTCTCGATGCAGGGACAAGCCattcgtttttttgttgttattttctTACGTCTTCCAACCGATTGTGATTGTGGCAACATTTGTTCGCGGTCCACCGCTATCTTCTGCAGCGTTCATGTAACCTTGTCTTCGAGCTCAGCCCTACGGGTTTTGCTACTGGGATAAGGGGACTAAAACGTTACTTGTCATAAATGGATCGCCATTCCAGTTTCATTTGCATTTGGCTACAACTGGAACTGTGTGCCATGGCTGTTCTTCTTACTAAAGGAGAAATACGGTGTTACTGTGATGCCCCCCACTGCGTGGCCACAGGCTACATGTGCAAATCGGAACTAAATGCCTGTTTCACCAAGGTGTTGGACCCTATGAACACGAACTCGCCTCTCACACACGGGTGTCTAGATCCCATAGCAAACGCTGCCGACGTGTGCAGTGCTAAGAACACAGATGCCCTGAGCAGGGGCTTGTCCACACTAGAATGTTGTCACGACGACATGTGTAACTACAGAGGACTACACGACCTGGCGCACACCAGAGAATCTACAgACCACGGCAGGTACCAGCCTGAGAGCAACAACCATAACCTGGTCACGCGGGTACAGGAGCTGGCCTCTGCCAAAGAGGTGTGGTTCAGGGCGGCGGTGATTGCGGTGCCTATCGCGGGAGGCCTCATCCTGGTTCTTCTCATCATGCTGGCTTTAAGGATGCTCCGCAGCGAGAACAAGCGGCTGCAGGACCAGAGGCAGCAGATGTTGTCACGGCTCCACTACAGCTTCCATGGCCACCACACTAAGAAGGGCCACGTGGCAAAGCTAGACTTGGAGTGTATGGTGCCTGTGACGGGCCACGAGAACTGCTGCCTCACCTGTGACAAGATGAGACAGGCAGACCTGGGAAATGACAAGATACTGTCACTGGTACACTGGGGGATGTACAGTGGGCACGGGAAGCTGGAGTTCGTATAACTTACTTTTCTAAGATCGTTTGACTTCACTTTATGTCCCACCACACCCTTCCCCACCCGCCCCCCAAAAAACAGCCAAGACTGCCTCCTCCACTCGTTGGGGTTTCTCTTTTAATTAAAAAATTAATCCCCTTTTTTGTCCATTGTACTTATCATTCCATTATTCAATGGAAGAAAAAAAGAGGACAGAATTGAACGCAAGCCTTGTGGTTTTTGCTAAAGGAGCACTTTACTTGAAAATTAAAGGCAAACCAATGAGGAGCTGAGCGGGCAGGGCTGAGCTGACGGATTGAAAGAGCTCTGTCAAGACCCTGTCTGCCTGTGCATCCTGGACTTTACACAGACTGCTGAAGGATTCCAAATCGGTCTTATTTGCACaattgtaaaaacaaaaaaacgttGTTTTGCTTAAAGAAAAGCTAAATAGGAGAAGAATTTTACACTGACACCAGGGtacaaaaaaaaactttttgaGGAGTATAGGTGACTTAAGGTGTGTACACTCCTCTGTACGTTTCTTGATCCAAGCTTATTGTAAagattgaaaatatatatatttttgtctgaAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1471887 lncRNA upstream 6011 38570346 ~ 38570624 (+) True G1289696
TU1471857 lncRNA upstream 8164 38564749 ~ 38568471 (+) True LOC110490038
TU1471869 lncRNA upstream 99255 38477165 ~ 38477380 (+) True G1289678
TU1471867 lncRNA upstream 100394 38475858 ~ 38476241 (+) True G1289676
TU1471690 lncRNA upstream 380535 38195782 ~ 38196100 (+) True G1289500
TU1471896 lncRNA downstream 3758 38584514 ~ 38585337 (+) False G1289700
TU1471898 lncRNA downstream 3758 38584514 ~ 38585455 (+) True G1289700
TU1471905 lncRNA downstream 11736 38592492 ~ 38592692 (+) True G1289707
TU1471906 lncRNA downstream 12607 38593363 ~ 38593574 (+) True G1289708
TU1471939 lncRNA downstream 49670 38630426 ~ 38630655 (+) True G1289740
XM_021563136.2 mRNA upstream 8156 38494289 ~ 38568479 (+) False LOC110490038
XM_021563135.2 mRNA upstream 8156 38494291 ~ 38568479 (+) False LOC110490038
XM_021563130.2 mRNA upstream 538610 38018211 ~ 38038025 (+) True LOC110490034
XM_021563126.2 mRNA upstream 558647 37974722 ~ 38017988 (+) False LOC110490033
XM_021563128.2 mRNA upstream 558647 37974722 ~ 38017988 (+) True LOC110490033
LOC110490723 mRNA downstream 274494 38855250 ~ 38856108 (+) True LOC110490723
XM_021564185.2 mRNA downstream 502058 39082814 ~ 39084700 (+) True LOC110490726
XM_036945535.1 mRNA downstream 507317 39088073 ~ 39089636 (+) False LOC110490841
XM_021563144.2 mRNA downstream 966588 39547344 ~ 39589108 (+) False brca2
XM_021563147.2 mRNA downstream 975113 39555869 ~ 39589108 (+) False brca2
TU1471681 other upstream 392632 38183436 ~ 38184003 (+) True G1289491
TU1469571 other upstream 2066123 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 2483239 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 4464364 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 5878599 32687558 ~ 32698036 (+) False G1282302
TU1471908 other downstream 14124 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 14124 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 456249 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 545516 39126272 ~ 39127009 (+) True G1290614
TU1473879 other downstream 1486802 40067558 ~ 40067907 (+) True G1291464

Expression Profile