RNA id: TU1472843



Basic Information


Item Value
RNA id TU1472843
length 692
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110490841
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39086859 ~ 39089636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaatacattgcctgctacCCTAAATTCAACTTagagcctatgtgggttaatattgccttatgaacctgtcttcgatgacaatccatcaggccacgatgaagtctacctgtgtcgattctaagcttcctggagcagccggaagtggttaaatttaAATTAACCCAAAAGTTATTTTGATggacataacctgcaaatgtgaaaatgactgcattcaaccctgtgtagatcagtcaattcttaacataaagactttaaactcaggatttcgtaagttgcaacattgaaatgcagaaaaccctttttttcttccaaaaacaagctctaaatcatttttgatgcactctggatgtccaatttttgctgtgctgtctatttgagattaaatgaacattgtggacagttttcagcaagttgcaacattgacaTACAGAAAAACttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgctgtcgatttgagatgaaatgaacgtTGATTTTTTAGGGAATGACTATATGCTCTATATTATACCTGCAGATCATCACAGCAGCTGATGTTGCTGCACAGAGGAAGgagatcctccgagcatcaggcATCATCCCTGAACAAAAGGAGTTGATCCTTCTCATGGCCAGCGTACCTGCGCACAGGGAGGGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1472788 lncRNA upstream 25611 39037427 ~ 39061248 (+) True G1290549
TU1472791 lncRNA upstream 53439 39027242 ~ 39033420 (+) False G1290550
TU1472807 lncRNA upstream 56229 39024349 ~ 39030630 (+) False G1290559
TU1472865 lncRNA downstream 34457 39122681 ~ 39123073 (+) True G1290613
TU1472877 lncRNA downstream 48567 39136791 ~ 39166202 (+) True G1290619
TU1472908 lncRNA downstream 93012 39181236 ~ 39184267 (+) True G1290623
TU1472909 lncRNA downstream 98238 39186462 ~ 39221901 (+) False G1290624
TU1472912 lncRNA downstream 98238 39186462 ~ 39224019 (+) False G1290624
XM_021564185.2 mRNA upstream 2159 39082814 ~ 39084700 (+) True LOC110490726
LOC110490723 mRNA upstream 230751 38855250 ~ 38856108 (+) True LOC110490723
XM_036944343.1 mRNA upstream 506103 38576635 ~ 38580756 (+) False LOC110490039
XM_021563144.2 mRNA downstream 459120 39547344 ~ 39589108 (+) False brca2
XM_021563147.2 mRNA downstream 467645 39555869 ~ 39589108 (+) False brca2
XM_021563152.2 mRNA downstream 467669 39555893 ~ 39589108 (+) False brca2
XM_021563145.2 mRNA downstream 467969 39556193 ~ 39589108 (+) False brca2
XM_021563148.2 mRNA downstream 467969 39556193 ~ 39589108 (+) False brca2
TU1472790 other upstream 49200 39037005 ~ 39037659 (+) False G1290549
TU1471908 other upstream 486618 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 486618 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 902856 38183436 ~ 38184003 (+) True G1289491
TU1469571 other upstream 2576347 36509078 ~ 36510512 (+) True G1287489
TU1472866 other downstream 38048 39126272 ~ 39127009 (+) True G1290614
TU1473879 other downstream 979334 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 1032045 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 2495149 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 2495149 41583373 ~ 41588087 (+) True G1293072

Expression Profile