RNA id: XM_021563161.2


Basic Information

Item Value
RNA id XM_021563161.2
length 9485
RNA type mRNA
GC content 0.48
exon number 28
gene id brca2
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39547344 ~ 39589108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCGTTTTAGCAACGCTAGTATTTAACTTACGAACTAGTTGTTTGACCCCCTGAAAAGTCTGCCGGAAGCCAGCAGTGAAATACAGTTCAATTTCAATGTACTATGTGGATTGTGTATATAGTTGATCATTATGCAGGGGGAATATGGAACATATACCGTGGGTCATGCAGTTCCTCCGGGAGGTCAGTTCCTTACTGCTTACCTCAAGTCAAAGTCCCCCACAATGTCTTGCTTTTTTGTGCCGTTTATGGCGCACTTGCAGGACTGTTATTTTGACATGAGGTAAGCGGAGAGGAAGTGGGTCTACAACTGACCCATGTTTGGAAAGTTTAATTAATGTTCTATTATATGCTTTTTCTCAACTTCGCCCCCATCATAAGGACCAACCTTACGGACAATTGGCAGAGCATACCACAGATGACCTAAGACATGGACATAAGGAGAAACATGTTTGATGCTTTCAAGGATCAAATATGGGAAGAGTTGGGACCTCTGAACCCAAACTGGTTTGAAGAGCTCACTGCTAAAGCTTCCAGTCGGGATTGGGGTGATACAGAGAAAGATAATCCCAGTACTGCAATATCTTGTGGACAAGATGGTAGTTTCAAAACACCATTGGGGAAATGTCCCCTTGATGGTGATATGTTCTCTACCCCGAAGATTTTCAGGCAAAGAAGACCACAGTCTCCTGAGACATTGATAGAAGATGCAGTGTTTTTTCCTGATCAAGGAACCTCTGCAACTGAAAAAATGGACACAAGCCCATGCTTATTTGGAAAATCAATAGACAGGACCCCCAGTAAATCCTATAGAACAAGGCTGCATGGAGACAGTTTTGGGCTGCTTGACACACCAAAACACTCTACGCAGGCACACTCTGCCAAACGTACATCTGAAAGTCTTGGTGCACAGTTAGACCCTGATATGTCCTGGACCAGTTCTCTCAATACACCTGTCATGTCGCCCACCATCATTTTGACTAAAAGTGAGGAGCATAGTCCTATGTGCCCAGTAAGAATTGCTACCGATGAGCAGGTTATGTTTGTGCGAAAGCTTTTCCCTTCGGCCAAGGAGTCTAGAAGCACAATGCTGTCACCAGAACAGAATGATAGACCTCTCTGTCAACACAATGGACTAGATTCCCACTTGCCTGGTGTGATTGACATCTCCCCTGGCTTTCAAGACACGTTACCTGGTGACAGTGGCAGCCATTGGAAACAGACTTTACCAGATGCTATTGAGGACGGAGAAATCTGCAGCACAATGACCGGTGTCCTAGATGGAGCCGAGGATGTCCTCTCCATATTCTTCAGCAACAAAAGTTTGGCTTTACAACGGGTGAAGACCAACGAGAGAATCAAAAGGAAGCAAAGTGGCGCAACTAAGAAACACGTACCTACTTCTACAACGGAACATGACAAAGTATCCAGTGGGAGAGCAGGAGAATACCAACACACCAGGGAAACATCTGAGCCTCTTGAGTCCAGGACTGACATGAAGTCTGGGGATTTGGCGACTTCTCAGTGGACTCCAATAAATGTACCTAACTTTTTAGGCTATGATATGGATTCATTTCACCATGAGGGGTCTTCCTCTACTAAACACATAATTCCACAAGGTGGCAAAAGTGAAACATTCCGTGACTTCACTGGAAGCCAGCAGCCGGATCGTGGTTCCTCTAAGCACACTGTCCAGGTGGAGTCTGCTCTTTCCAGAAGAAGATTACCATGCACCAGCCAGCCAGAGGGATCTCAATTGACAGGGTCTGTAGTCGAAAGCTCTCTAGAACACACATTTCCcaggaaaacaaggacatttgtttACTGTGTCCAAAATCCACTTCTGTCAGTGCAAGAGAAATATGTTACTCAGATGTTACCTGCATCACCTGGAACTGCTCCCAGAGGTGAAAATCAGAACATGAAACAAAGTAAAACCATACCAGATGAAGCTGAGTTTAATAATCTTAACAAAACTGCCTTGGATGGGAAAAAGCCGCTAGTTCAGAAAAGTGCAACTGAAGAAAATATTGTTTCACAAGCACCAACCAAAGACCCTGATCTTGATATGTCACAGCTTTGCAGGGTATTTGCGCAAGATTTTAGCCAAGTAATTGACTACAGTCAACCATGCAGCAAAAGAGCAGATGCTATTAAAAATGGCTTCTCTGTATCAGCTTGTCTCCCAGCAATGAGACTAAGGAACAGAAAACTGTTGAATAGACTAGAATGGGGTCAGAAACCTGAACATTTGAACTCTGGCATCAGTGATGAAATGCATATTCCTGGTTCTCAGTTTAGCAACTCTGCAAACACATCTAGAATGAAGAGTACAGTGTGTGATAGCGGCTTCCCCCCCTCCACCCTTTCTGATGTCACACAAACAGAATCATCCATTCACCCTAGCTCTGAAAAAAGTTATGGAAATCAATCATCTAGAGGGTTTAAAACGGGTAACAACTGGATTATCTCTTTGCCTCCAGAAGCAATAAAGAAAGCAAAAGCATCATTAGAtgacttaattgaggaaaatatgaCTGATGTTGTTACTGCTGCCAGTGAAGTGAAacctgtgttgtcatgtgtgaCAGGAAGCCGACTGTCCACAGAAGTGAAGTTCATTAGTCCACTCAACATTGCCAAAAGGTCAAAGCAAACCAGCGTAAAATTGAATGGTCAAGTTCATGTTCCGACCCATCAGAGCAATGTTTCGGTTTCCTCACACCCTGGGTCTGGTTTCAAAATGGCCTCCAATAAGAAGATACGTTTTTTTTCAGCAAATCTGGAGAAAGACGAGGATCTGTTTAAGGAGATTGAGGATGAAATACCTGCAGTCAATATTCCCGAGATAAGCCTTCCTGAGGAAGGTAACATGTCATGTGGATTGGAGCTTGTTGATGGATCTCATTTACCACCTCTACTCTATACACACCAGAGGTCTGTTAATAGCCAAGGTCCATTGACAGCCTCACAGAGAGCTGATGTTTCAGAATTGTGCAATCTCTTAGAAGCTGCAGACAGCCAATTTGAGTTCACACAGTTTAAACCAGCAAAGCTGAACTTCTATGTTCCAGATGGTagcccccctcatcaatctgagAAAGAATTGGATCCCGACTTTCTCACAGGCATAGATTTCGATGACAGTTTCAACTCTGATGTTGAGAAGCAATCTGTGAAGATGGTCACCCCTGACAAAAAGACAACTATTTCTCATTGCAAGGAAATTTGTCAAGTAACAACcaccaaaattaaatctagtgGGGCATCATCCAGCAATTCAACAGAGAAATCCAAAGAACATGTTATCCACAGAAGAGTACTTTACATTCCCAGTTATAGCTCTGAAAACATAGCTGAGCATTCCTTTGGTTTGTTGACAAAATCCACAAACAAGAACCATCTACTCGATATGGATACGAACACCAGTGGAATGGAGTGTGAACGCAAAAAGTTGGATGTGGGTTTTAAAACTGCTGGCGGAAATGCTATGATAGTTTCAGAGAAGTGTCTGAGCAAAGCAAGGGCCTTGTTTGCAGATTTTGAGGAAAAAAACTGTGCACCCAAGTGTGCAGTAAAAAATACGGAACAAGTTGAAATTTCACCTGTTCAATATAGAGGTGAAGTTGACACACATGTTGATTCAAATGTGACACATTTTCATGGCCCTGAAAATAAAGTAGATCTGAAGGAACCACATGATGAATACATTGACAAGATTAAAGTGGACTttacacattctcacacacatgGGGATGGTGGTTTCCAGACAGCCAGTGGTAAAGGAGTGACCATCTCGGCAAAGGCCCTTCAAAACACCAATGCAGTCTTCAAAGACTGTGACGCTATGGAAAGTTCAGGTTGTGCATCAGAAAAGCTGAGCAAAACAAGTGTTGTATCAGAGACTGGCAGTAATAATTTTGAGAGAAACAATTGTGGCTTCAGCACTGCTCGAGGGAAGAGACTTGATGTTTCTGCAAAATCTCTACTGACTCTCCTGAATGACTGTGATGAATTGGAAAATTCTAAGCCAGGGAAAATCCCCAGCTTGAATGCAAAGATACCAAGTCAGAATATTCAGCAGAAAAGTGACTGTGATTTTAAGAAACCCAGTATTAAAGCAGCCTCCATATCAGCAAGGATCCCTTTTACAGCAAAAACTCAATTTGATAGTGGCATGTCACATGATGTTCTAGGGGCAAAGAGCAAAATGCTTGAACCAGAAAATTCTCAAACCCATGCTAAAGATCCTTTGAAAAATGGATGTGGGTTCAGCACTGCCAGTGGTAAAAGAGTGTCTGTGTCAGAAGGGGCGCTATTGAAAGCACAGGCTCTTTTGAGTGAATGTAATGTAGATGGAGAGGAACTTTCTAAATCAAAGAAAAAGATCAGAGTAGATCTTCATAACCCAACACAGAAGCACAGTGGATGTAAGACTGCTGGTGTCAAAGAAGTTACCGTATCACCTAAGGCCCATAAGCAAGCACAGGCTCTTTTCAACAACTGTGATTTCAATATGGACAGCTTAATCAGTGCTGAAGCAAAGCAAGGGAATATAGACGTAAAGTCTGCTGATGGTCTGATGAACAATCCAGGGAAAAGCTATTGTGCCTTCATGacagctggtggagagaatgtgCATGTATCTGAAAAAGGTATTTTGAAGGCGAAGAGCATTCTGAATGAAAACCTTGATAACTGCACAGACTCAAATGCCATTGAGGAGGCTTGGTTTTCAGATGGTAGATTTTTGTTACTCACTGAAGATGGTACAGGTGTCAAAAAAGGAGCAAGAAACAAATCAAATGATTCTGACCTCAACGGGGATGAAAAGAGCTGTGATTTCAGCACTGCCGGTGGGAAGACTGTGCATATGTCCGATGGAGCACTCCAGAAAGCAAAGTCTATTCTGAACGAATGTGATGTAATTGAAAATCCACAACCTGAGAATGGCCACAACGTGCATCTGGAAAAGATTCCAACAAAGGAAACGCATGAAATCTCTCATGGTAGTGCAGCCAGTGGGAATGGGGTGTTTATTTCAGAAAAGGCTCTTCAGCATGTGAAGTCTGTGTACGTTCTGGGTGAGACTGGTAATGTAAAATATTCAGTTGGCAGTAATCCAGTCGGAAGCCATTTTGGTTTTAGCACAGCCAGTGGTAAAGGACTGTCTGTTTCAGAGAAGGCACTTCAAGAAGCGTGTGATGATACCCTTGCCAGGGATACTGACCCTCACAAAAGATCTGAAGGAAATAGGCCACTGAAGGTCCCTTCTCCCCATATTAATGTTCAGCGTGTGCCGGTCAAAGCAGTTCGACTGGAGGACCGTGAAGTGATCCAGACCATTGTTGGAATGGAATGGAAGTCTTCATCTGTAGAATGTCAAGCGGAGTATTCCTTGTTAAATTTTGAATCCCTTGGATTCAGTGGCTGCTCTGTGACCCAGAGGAGGTACTTTGCCCAGGAGGCCATGGATTGTACCAAGGCTCTTTTAGAGGACGAAGACTTGACCGATCATTGTCCTGGAACACCAATCCAAGCTAACCCCATGTCCTGCAAGGGGGGTTTTGAGATGAGAAGTGGAATTGGGAAAAGGTCGGCAGAGGATTTAGGGATGACAGACCAGCCTCCTCTGAAAAGAAAACTCTTGACCAAATTCGACAGAACTGTGGATTGTATTCGACGGTCAAAACTCACTCCAGCTAAAAGCAGTTCAGATGGTATATTTAAAGACAGGAGAGTCTTCAAATATAATGTGGCTCTTCAACCTAATGTCACGAGGCCATATCGCGCTATTCAGAGATGTGTAGACACAAGGCTGAATAAGCCCGAGCCACAGAAGACAACGTCAGATCCAACTGCCGAAGACCGTAAACCAGTTAGCTCCAAGACAGCTGTATTTGTCCCCCCATTCCGGAAGAATGTCAAGCTTGAGCCACAGGGGAGCAGTGGTCTTCAGGACAAGACTAGAGCGCCTGGTGTGTTTGTTTCCCCGTTTCTAAAAAACAACCGCTTAACCAGGGAGGGTTCCTTTAAGCCTTCAGAAGATAATCATTCTCCCTTCATCTCTGAAATGCCTACCAAGACCACATCTGTTCCACTTCCTGAGTACAACCCCATCACTGACACTGGTAGTGATAACGCAAAGGAGTCCATTAAGGAACAGGACCCACAAAATATTGACAAAACGGACCGAGGTGATGATTGTGGCCATTGCCTTCCTGTCACCCTAGGAGGAGAGGGTGCCACTGCAGAGGAGTCTATTGCAGGTCAGCTAGCCCCTGATGCCACCGGTACCCTTCTAGATGTTGTTTATGatgcagaGTGCTTGCAGCTTGCCCGAGACATGCAGGACATGAGGATCAGGAAGAAGAAGCGGCAGACCATTAGACCTCTCCCTGGCAGCCTGTACCTGGCCAAGACATCTGGGGTGTCCAGGCTGACCCTCAGAGAGGCTGTTGGAGGTTGGCACCCTGTACAACACACGCACAAACAGCTGTATGGCTATGGAGTGCACCGGCATGTTTGGGATATCAGCAGTGAGAGTGCTGAGGCGTTCCGCTTTGTTTGCCGACACTTCTTCAGACGCGAGGCGTTTGTAGAGGGGTGCATTCAGCTGGCCGACGGGGGTTGGCTCATTCCTCGCAACGATGGAACTGCAGGGAAACATGAGTTCCACAGAGCATTGTGTGACAGCCCTGGCGTGGACCCCAAGCTGATCAGTGAGGACTGGGTGTTCAACCACTACCGCTGGGTGGTGTGGAAACGGGCCTGCATGGAGAGGGCATTCCCAGAGGTGATGGGCAGCCTCTGTCTCACACCAGAACAGGTGCTCCTACAACTGAAATACAGgtacgACTTGGAGGTGGACAACAGCAAGAGGTCAGCTCTAAGGAAGATCATGGAGAGAGACGACACGGCagtcaagaccctggtgcttTGTGTATGTGGTGTTGTCACCAAAGGCCATAACCCAACAAGGCAGAGCTGGAGTGAGACCAAGACCAAAACCCCACCCGGGAGCGCCGCAGGGTCTAAAGCGAAGTCGTCCCCTGTAGGCTTGATCTGGCTGACGGATGGCTGGTACGCCATCAAGGCCCAGCTGGACGTCCCACTGACCGCCATGCTCCACCGGGGCCGCCTGGCGATTGGGGGAAAGGTGCTGGTCCACGGGGCCGAGTTGGTGGGATCTCAGGATGCCTGCTCCCCACTAGAGGCTCCCGACTCCCTCATGTTGAAGATTGGGGCCAACGGCACCAGAGCGGCGCGTTGGTACACCAGGCTAGGGTTCTACAGCAACCCTAGTccgttcctcctccccctctcctccctctacagcAACGGAGGCACCGTGGGCTGTGTGGACATTGTGGTGCTGAGGAGCTACCCTACCCAGTGGATGGAGAAGAAGTCGGATGGAGGGTTTGTGTTCCGCGCAGGCCgtgcagaggagagggaggcacgGCGTCATGGCAACGCCAAACACAGAGCCATGGAGATACTGTTCGCCAAGATCCAGGCCCAGTTTGAGAAGGAGGAGGATGTTACAAAACCTTTTCCGCCTACTGAACATCACCCAACAGTTTGCGGTAAACCCAGAGGCCGGAGACGGACCCTGCGTGGTCGAGACATTGAGACACTGCTGGACGGGGAGGAGCTGTACGACGCGGTGGAGAATGACCCAGTTTATTTGGAGGGCCGTCTGAGTGAGGAGCAACGGGAGGCGTTGAACAGCTATAGGCGTTGTGTTGGTGAGAGGAGGCAAGAGGCACTGCAGGAGCGGTTTCGCCAGGCTCTGGAAAGCACCCAGGAGGGCGAGGGCAGGAGCTGTCACAACCGAGACGTGACCCCCATCTGGAAGCTCAGCATCGCTGACTCCAGGGCCAAGCCGGGCAGCAATGCAGTGTACCTGTTGAATATCTGGCGCCCCTCCATGGATCTGCAGTCCTTGCTGAAGGAGGGCTGTCGATACAGGGCCTACCAACTATCCACGTCGGAGGGCAAGAAACGAGCCGGTAATACCTCCATTCAGCTCACCGCCACCAAGAAAACCCAGTTCCAGAATTTACAGGCTTCTGCAGGGTGGTTGTCTGAGATTTTCCAACCCCGAGAGGCGGTCGGCTTCCGCGTTCTCCTGAACTTAAAGCCGCTCTGTGGAGAGGTGGATCTGGTAGGCTACGTCATCTCCATCACAGACAGACAAGGTCACTCTCCAGTGGTGTATCTAGTGGATGGCTGGCTGGACTTTGTCGAGGTGCGCTGCTGCAGCAGTCTGGTCCAGCAGGGCTTGGAGGAGGTGGTCAAGCCTTTGGCTCTGGTGGCCCTCAGTAACCTTCAGCTCAGagcccatccctcctcccccacccccatCCGCAGCGCCATCCCTGGCCTATACGCTGGAGATCTAGTCTCGTTTTCCACCAACCCTAAGGAACCACATCTACAGGAGGCTGCTGCTCAACTCAGGACCCTTGTCCAGGGCCAGGAACACTTCTTCAGGACTGCAGAGGAGAGGTTATCTAACTTAATCCAGGTGTCTGTCCAGTGTCTTCCTCCGCTGCCATGGAAAGCAGATGCCAAACCAGATTCAAGGACTACTATGAAACCCCAGCAGTCAGTTCGAAGCGTTGGCCCCTTCACCCCTCTGAACAGCGTCGTCCCACCTCCACCCGCCTGCTTCTCAGGGGGGGACAACAAAGACCCCAAGAGCTTGAAAAGAAAGAGGGGCCTGGACTACCTGTGTCgcatcccctctccccctccactctgcCCCTTGGGCACCATGACATTACCCTCGCCGTGCGTCAACAAGACCTTCAACACCCCTCGGAGGGCTGAGACCCACCGGATCCTAAAGACACCTCTGGCCCCCGCTCCACAGCATGTCCACCTGCCCCTAGAGGATGAGTGGGTGGAGGATGAAGAGCTGTTCATGATTGACACTCAGGCCTTACACGATGGCATAGAGAGAGACACGTGACAGAGAATGTATTGGACTGTTATTTGAAAGGTTTCAGAAAACATCAGCACAAAGCTGGTCAGCTTCTCCGAGCCCACATGTTGAATTTGTGTGTTGGGAATCCACCTGGAAAGATGTAGTGCCTTTTGTAAGCTACGGGAGGGGGGGATTTTAGAGGCTAACCATGACATGATTGGTGCCAGGTGAATGTCAACACTAGCAAATGTTGGAAAATTATCATATGGAGTTGTTTGTAACATCAGGCTGAATCAAGTTAGGATTTGGTCCATCTCGCCTTTTTGGGCCAAGGTATTGATGCCAACAAGGAGCCCAACAAAATGCATCGGACAGAAAAGGGGTTGTCTTGGAGAACTCCTGAAATAGTTTAGTGAAATGGCATTCGAAGAACCGTCACGAACTGTATGATATAAATGAAAAAATACTGTAACATTTACGTCCTTGTGTTTATGACCGTGTGTGCTCACATCTGCATGTTCACAATAAATGTTCTAATGTATTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1473048 lncRNA upstream 3611 39552805 ~ 39553148 (+) True G1290724
TU1473047 lncRNA upstream 6702 39549487 ~ 39550057 (+) True G1290723
TU1473045 lncRNA upstream 8369 39547757 ~ 39548390 (+) True brca2
TU1473038 lncRNA upstream 11439 39544939 ~ 39545320 (+) True G1290719
TU1473037 lncRNA upstream 12222 39544178 ~ 39544537 (+) True G1290718
TU1473059 lncRNA downstream 14367 39603475 ~ 39603869 (+) True G1290735
TU1473063 lncRNA downstream 19389 39608497 ~ 39608931 (+) True G1290739
TU1473073 lncRNA downstream 32523 39621631 ~ 39621875 (+) True G1290749
TU1473192 lncRNA downstream 221729 39810837 ~ 39811038 (+) True G1290854
TU1473194 lncRNA downstream 225816 39814924 ~ 39815258 (+) True G1290856
XM_036945535.1 mRNA upstream 467123 39088073 ~ 39089636 (+) False LOC110490841
XM_021564185.2 mRNA upstream 472059 39082814 ~ 39084700 (+) True LOC110490726
LOC110490723 mRNA upstream 700651 38855250 ~ 38856108 (+) True LOC110490723
XM_036944344.1 mRNA upstream 976003 38576635 ~ 38580756 (+) False LOC110490039
XM_021563169.2 mRNA downstream 60262 39649370 ~ 39684044 (+) False LOC110490049
XM_036944352.1 mRNA downstream 60262 39649370 ~ 39684044 (+) False LOC110490049
XM_036944354.1 mRNA downstream 60262 39649370 ~ 39684044 (+) False LOC110490049
XM_036944353.1 mRNA downstream 60271 39649379 ~ 39684044 (+) True LOC110490049
XM_021563172.2 mRNA downstream 323334 39912442 ~ 39929225 (+) False LOC110490050
TU1472866 other upstream 429750 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 519100 39037005 ~ 39037659 (+) False G1290549
TU1471908 other upstream 956518 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 956518 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 1372756 38183436 ~ 38184003 (+) True G1289491
TU1473879 other downstream 478450 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 531161 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 1994265 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 1994265 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 2319926 41909034 ~ 41909611 (+) True G1293295

Expression Profile