RNA id: XM_036944353.1


Basic Information

Item Value
RNA id XM_036944353.1
length 2769
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC110490049
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39649370 ~ 39684044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAGCGCGACCAAAACTAAACGCATGCGCATATGACGGCCCCAGTCCTTTGACGCCATTTGAAACATCGCAGGACTGTTTTTCTTCAGACAAATGGATGGCGAAGAGGACGAATTCTTCTCCGGGAACCACTCTGATGGTGGTGGCACCCCTGTACAGGACGAAAATGCTCCCGGTTCAGATGCGGAAGAGGAGACGAGGAATGAGTCGTGCCACTCAGAGGATGAGAATAGTCATGGTGAGGGAGCAGCTCAGGCCATGGAGACAAATGGTTTGGCCAGTGGGTCAGACAACGAGGGCCACAAAAGGGAGGACAGTGACTCTGAGGAGGAGGCACCAGTCAAACGCAGCACCTCAGACATAGAGTGCACCCCCCCAACCAAACGCAGAGGCAGCAACTCGGACATTGAGGGGCCCCCAATCAAACACAGAGGCTGCACCTCTGACATGGAGGAGAAAGAAACCAAGCAGGCTGCAGCCGGGAGTGACTCTGAGAACGAGGATCAGCCCCCGTCTCCAGCACGGAGCAGACACTCAAATGCACGCAGTGATTCTGAGACTGAGGTGCCTGAACACAAAGCGCAGATCAAGTCTGATGGAAAGGAGGAGGCGTGCGGTGAGAAGAAAGGGAAGTGGAAGGCTGTAATGCATTCCGACAGTGAGGATGAGGTGGAGGCTCGGTCAGTGAAAGCAGCTGCAGGCAGTGGCCAGGAGAAGGATAGTCCCGCAAAACGGGTGGTGGACGATAGTGAGGATGATGACGCAATGCCAATGAAGAGGAAGAAAGCCATCCTGTCAGACAGTGAAGATGAGCAGGAAAAGGCTGACGAACCAGCGTCGAAGAAGAGCCGCACCGTGTCTGACGATGAGAACTCTGACAGTAACGCAGGCTCAGAAGCGCCCGACAAAACCATGGCCAAACTGCGGGAACTGGGCTCAGAAAGCGAAGACGAGGATGATGGACAGAAGGCGTCAGGAGGGAAGGATGAGAAAACACTGTTTGGTAGCGACAGCGAATCAGGTGACGAGGAAGAGAAAATGATTGCAGACATTTTTGGTGACTCaggtgatgaagaggaggaagagtttaCGGGTTTCAATCAGGAGGATCTGGAGGGGGATAAGAACCAATCACAGGCCTCGGCAAAGAAAGCAATGGAAGACGACTCGGACTCTGACGAGGGCGTGGACAGGGGTGGTGTCCAAGACACCAGCTTCATGTCAGACTTTGACGTGATGCTGGCTCGTAAGAAGGCCCAGAGCGGGAAGCGACGACGGAACCGCGACGGGGGAACTTTCATAAGTGATGCTGATGATGTGGTCAGTGCCATGATCAGTGCCATGACAGAGGCTGCAGAGGAGGACAGAACACTGAATGCTCAGAAGAAGCCAGCCTTAAAAAAGCTGACCCTCCTCCCCACTGTAGTTATGCACCTGAAAAAgcaAGACCTCAAGGAGACGTTCATCGACAGTGGAGTGATGTCGGCCATCAAGGAGTGGATTGGCCCGCTGCCAGACAAGAGTCTCCCGGCCCTCAAAATCAGAGAGGATCTCCTCAAGATCCTACAGGAACTCCCCAGTGTGAGTCAGGAGACTCTTAAACACAGCGGGATTGGCCGAGCCGTCATGTTCCTCTACAAACACCCCAAGGAGTCGCGCCCCAACAAGGACCTCGCCCTCAAACTCATCAACGAGTGGTCCCGCCCCATCTTTGGCCTGACATCCAACTACAAGGGCATGACGCGCgaggagagacaacagagagaccTTGACCAGCAAATGCCGCAAAAAAGACTCCTCAGTCAGCCCCAAACGGTGGATAGGTCCAAGGAACCGGATGTCTTCTCCCCGCAGCAACTCAGctCAGGGGGACAGACTCCTCATAGAGACCTGGAGAAAGTACTGACAGGAGAAGAGAAAGCTCTACGCCCAGGCGACCCTGGGTTCTGTGCCCGAGCCAGGGTGCCCATGCCATCCAACAAGGACTACGTTGTGCGGCCCAAATGGAACGTGGAGAGCGAGTCCAGAGCAgccCCGGTTAAGAAGGGCATGTCACGGGTGGACAAACAGTTGCGCCGCTTTGCCGACATCAAGCGTATGACGAAGACGGGCCACGCGGTGAAAATCAGCGTCCAGGGCAACCGGATGCCCCTCTGATTTTTAAAACTTCTAGTTTTTTTTCAGACTTTTTTTATTTCTCCTTTTTTATATGTTGCTCCTATAGCATGGTCCCAGTTCAAATTGTTCATCATTACTTTCTTGAAGTGATTGGCTACATGAAAGCATAGGTTTCAATTCAGAGCTGTGATTATTCCAAGGAAGGGATGATAGAATAATGCAATTATTTCTTTGATTTGGGCCAGGGTCCCAGTTCTGTGCACTTTAGCCAACTCCTCTAACTAGCATGACAATGTTTAGAAGAGTTGGCTAAAGCACATGGGACCATTCCCTATATAAACCCCTTCAGCCCAGCCTGAATGTATGATAGTGGTGTGGATTCACAGGCTGGTTGGCCTTCGGTCCTCTAGACTGGGATAGATTCAATACGGAGTGTGGAAGATTCACGTTGTAGCGCGATTGAGCAGACATTTAGCGTTTACCAAACATTGCCCTTAAATTGCAATTGCTCCATATTGAATATACATTAGGCCTTCATTGTTTTACTTTGTTTCTGAAGAAGCTGTACAGACTTAGGAGCTTGCCTGTGTGTCTTCACTGTGTGCTGGTTGGTTCCGAAGTTACTTTCCTAATAAAGAGGGTTTCACCAGA

Function

GO: NA

KEGG:

id description
K17498 SPN1, IWS1; transcription factor SPN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1473073 lncRNA upstream 27504 39621631 ~ 39621875 (+) True G1290749
TU1473063 lncRNA upstream 40448 39608497 ~ 39608931 (+) True G1290739
TU1473059 lncRNA upstream 45510 39603475 ~ 39603869 (+) True G1290735
TU1473048 lncRNA upstream 96231 39552805 ~ 39553148 (+) True G1290724
TU1473047 lncRNA upstream 99322 39549487 ~ 39550057 (+) True G1290723
TU1473192 lncRNA downstream 126793 39810837 ~ 39811038 (+) True G1290854
TU1473194 lncRNA downstream 130880 39814924 ~ 39815258 (+) True G1290856
TU1473202 lncRNA downstream 140922 39824966 ~ 39825165 (+) True G1290864
TU1473205 lncRNA downstream 143414 39827458 ~ 39827684 (+) True G1290867
TU1473206 lncRNA downstream 145054 39829098 ~ 39829301 (+) True G1290868
XM_021563161.2 mRNA upstream 60271 39556759 ~ 39589108 (+) False brca2
XM_021563172.2 mRNA downstream 228398 39912442 ~ 39929225 (+) False LOC110490050
XM_021563178.2 mRNA downstream 252842 39936886 ~ 40053076 (+) False LOC110490053
XM_021563177.2 mRNA downstream 252935 39936979 ~ 40053076 (+) False LOC110490053
XM_021563175.2 mRNA downstream 300496 39984540 ~ 40053076 (+) False LOC110490053
XM_021563176.2 mRNA downstream 308892 39992936 ~ 40053076 (+) False LOC110490053
TU1472866 other upstream 522370 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 611720 39037005 ~ 39037659 (+) False G1290549
TU1471908 other upstream 1049138 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 1049138 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 1465376 38183436 ~ 38184003 (+) True G1289491
TU1473879 other downstream 383514 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 436225 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 1899329 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 1899329 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 2224990 41909034 ~ 41909611 (+) True G1293295

Expression Profile