RNA id: XM_021563177.2


Basic Information

Item Value
RNA id XM_021563177.2
length 1561
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110490053
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39936886 ~ 40053076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGATAAACAGCGTGCGGACACTGGTAGGCTTAATGCACACGCGTGGACAGACACAGCGGTCAATTTGCTTGGTCGGAAATCACCCCAAAATATCCGAGTTAGCCATTTTGCCCTACACAATATCGACTCACGGACAGTCCGGCCATTGATAAACCAGCTGTTCTCACTGGTCACGCTTGTTGATTACAGAAGCAGACAAACCAGGAGGGAAGAAGAACCACATCCCGACCAGAACAGCTCTGACATCTCCCAGAAACGAAGCGTCTCTAACTTCCCTCCCTGATCAACCTAATCACAACGGGAGATGGAGATCATTAAAGTAGATAAAGCAGACAAAGCACCCGAGCCGCAGCTGAAGGGCATTGTGACGCGACTGTTCAGCGAGCAGGGCTTCTACCTGCAGATGAAGCCGGACGGCACCATAAATGGGACCAAGGACGAGAACAGCGACTACAcTCTGTTTAACCTCATCCCGGTGGGGCTGCGGGTGGTAGCCATCCAGGGGGTGAAGGCCGGCCTCTACGCAGCCATGAACGGAGAGGGCTTCCTCTACACCTCAGACTTGTTCACAGTAGAGGCGAAATTCAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCATCAACACTGTACCGGCAGCACGAATCTGGCAGGGCCTGGTACATGGGCCTCAACAAGGATGGCGTGGTCATGAAGGGCAACCGGGTGAAGAAGACAAAGCCATCTTCACACTTTGTGCCCAGACCCATCGAAGTTTGCATGTACAAAGAGCCATCGCTGCATGACATCGAGGAGAAGGGCCGCTCACGGAAAGACTCGGGAACTGAGGCTCCCGCTCTCCTAAACGGAGGAGAAAAAGTGGCGGGCCAGGACTCCACAGGGCAGGACGGTGGCTCATAGCCTGCACATCGCTCCATTGATTTCTTACACCTTGTTCAACGACAACAACAACGACGATAAATGAGAACacaacaaaatataaaaaataaatatattttaaaatcagGACGTTGAATTGACATTTTATGCAAAAGCCTGATGCGAGTGTGGCACCAGGAAGCTCATCCTCCTTATCATGACAATGTCAATGTTTCAAAGTCAAGCTCTAAAATAAGTTTTAAACCATGCTAGTTCACACATCTTGATTTAATGAATGCGACAGCACTTTCATTGTGTTGTTATAATCATGAATAAGAATTGTATTGTAATTgatttagggctctattcaatctgatcGACTTTTGTCGGCATACGCATAGCGGTCGTCTTGGCGGTGTCGGAGATGGAACTGCGCTAGAGCTGTCAAATCGACATgcggctcctggcattatacctaaagcagacattgccattaagagaaatcccatgcagccttgtttacaagttcgaACACAGGAATGTGagattaggctgatagaaatcctcataATTTAGTTTAAAGATTTTCAATTTGAGCGTCATATTTTCTCTATATCCTACACTTTCTCATTCTGAACTCGGGTGTGGCTTCATGACAATGATCAAGAGCAGCTGCTTAcagatttgacagctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1473183 lncRNA upstream 7756 39845713 ~ 39929223 (+) True LOC110490050
TU1473185 lncRNA upstream 42117 39887594 ~ 39894862 (+) True G1290849
TU1473186 lncRNA upstream 47786 39885623 ~ 39889193 (+) False G1290849
TU1473221 lncRNA upstream 62349 39869833 ~ 39874630 (+) True G1290883
TU1473218 lncRNA upstream 96829 39839948 ~ 39840150 (+) True G1290880
TU1473862 lncRNA downstream 5882 40058958 ~ 40059184 (+) True G1291447
TU1473872 lncRNA downstream 11194 40064270 ~ 40064490 (+) True G1291457
TU1473881 lncRNA downstream 15405 40068481 ~ 40068826 (+) True G1291466
TU1473900 lncRNA downstream 25347 40078423 ~ 40078746 (+) True G1291485
TU1473903 lncRNA downstream 28626 40081702 ~ 40082048 (+) True G1291488
XM_021563172.2 mRNA upstream 7754 39912442 ~ 39929225 (+) False LOC110490050
XM_021563169.2 mRNA upstream 252935 39649370 ~ 39684044 (+) False LOC110490049
XM_021563167.2 mRNA downstream 36388 40089464 ~ 40132600 (+) False LOC110490048
XM_021563168.2 mRNA downstream 36399 40089475 ~ 40123599 (+) False LOC110490048
XM_021563198.2 mRNA downstream 977300 41030376 ~ 41088538 (+) False tfdp2
XM_021563196.2 mRNA downstream 977301 41030377 ~ 41088538 (+) False tfdp2
XM_021563197.2 mRNA downstream 977303 41030379 ~ 41088538 (+) False tfdp2
TU1472866 other upstream 809970 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 899320 39037005 ~ 39037659 (+) False G1290549
TU1471908 other upstream 1336738 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 1336738 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 1752976 38183436 ~ 38184003 (+) True G1289491
TU1473879 other downstream 14482 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 67193 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 1530297 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 1530297 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 1855958 41909034 ~ 41909611 (+) True G1293295

Expression Profile