RNA id: trnap-ugg-16


Basic Information

Item Value
RNA id trnap-ugg-16
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-ugg-16
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41243531 ~ 41243602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctctttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475441 lncRNA upstream 8512 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 17759 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 45754 41197095 ~ 41197777 (+) True G1292792
TU1475270 lncRNA upstream 66468 41176206 ~ 41177063 (+) True G1292775
TU1475269 lncRNA upstream 67811 41175464 ~ 41175720 (+) True G1292774
TU1475448 lncRNA downstream 15279 41258881 ~ 41385174 (+) True G1292939
TU1475451 lncRNA downstream 18766 41262368 ~ 41263796 (+) True G1292941
TU1475457 lncRNA downstream 45302 41288904 ~ 41384912 (+) False G1292944
TU1475454 lncRNA downstream 48668 41292270 ~ 41337809 (+) True G1292944
TU1475464 lncRNA downstream 117205 41360807 ~ 41381768 (+) True trnap-cgg-68
trnap-ugg-15 mRNA upstream 864 41242596 ~ 41242667 (+) True trnap-ugg-15
trnap-ugg-14 mRNA upstream 2734 41240726 ~ 41240797 (+) True trnap-ugg-14
trnap-ugg-13 mRNA upstream 3669 41239791 ~ 41239862 (+) True trnap-ugg-13
trnap-ugg-12 mRNA upstream 4604 41238856 ~ 41238927 (+) True trnap-ugg-12
trnap-ugg-11 mRNA upstream 6474 41236986 ~ 41237057 (+) True trnap-ugg-11
trnap-ugg-17 mRNA downstream 864 41244466 ~ 41244537 (+) True trnap-ugg-17
trnap-ugg-18 mRNA downstream 1799 41245401 ~ 41245472 (+) True trnap-ugg-18
trnap-ugg-19 mRNA downstream 2734 41246336 ~ 41246407 (+) True trnap-ugg-19
trnap-ugg-20 mRNA downstream 3669 41247271 ~ 41247342 (+) True trnap-ugg-20
trnap-ugg-21 mRNA downstream 6474 41250076 ~ 41250147 (+) True trnap-ugg-21
TU1473916 other upstream 1112797 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1175624 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2116522 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2205872 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2643290 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 339771 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 339771 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 665432 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1521251 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2353322 43596924 ~ 43597464 (+) True G1295348