RNA id: trnap-ugg-20


Basic Information

Item Value
RNA id trnap-ugg-20
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-20
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41247271 ~ 41247342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcttgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475441 lncRNA upstream 12252 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 21499 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 49494 41197095 ~ 41197777 (+) True G1292792
TU1475270 lncRNA upstream 70208 41176206 ~ 41177063 (+) True G1292775
TU1475269 lncRNA upstream 71551 41175464 ~ 41175720 (+) True G1292774
TU1475448 lncRNA downstream 11539 41258881 ~ 41385174 (+) True G1292939
TU1475451 lncRNA downstream 15026 41262368 ~ 41263796 (+) True G1292941
TU1475457 lncRNA downstream 41562 41288904 ~ 41384912 (+) False G1292944
TU1475454 lncRNA downstream 44928 41292270 ~ 41337809 (+) True G1292944
TU1475464 lncRNA downstream 113465 41360807 ~ 41381768 (+) True trnap-cgg-68
trnap-ugg-19 mRNA upstream 864 41246336 ~ 41246407 (+) True trnap-ugg-19
trnap-ugg-18 mRNA upstream 1799 41245401 ~ 41245472 (+) True trnap-ugg-18
trnap-ugg-17 mRNA upstream 2734 41244466 ~ 41244537 (+) True trnap-ugg-17
trnap-ugg-16 mRNA upstream 3669 41243531 ~ 41243602 (+) True trnap-ugg-16
trnap-ugg-15 mRNA upstream 4604 41242596 ~ 41242667 (+) True trnap-ugg-15
trnap-ugg-21 mRNA downstream 2734 41250076 ~ 41250147 (+) True trnap-ugg-21
trnap-ugg-22 mRNA downstream 3669 41251011 ~ 41251082 (+) True trnap-ugg-22
trnap-ugg-23 mRNA downstream 4604 41251946 ~ 41252017 (+) True trnap-ugg-23
trnap-ugg-24 mRNA downstream 6116 41253458 ~ 41253529 (+) True trnap-ugg-24
trnap-ugg-25 mRNA downstream 7051 41254393 ~ 41254464 (+) True trnap-ugg-25
TU1473916 other upstream 1116537 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1179364 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2120262 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2209612 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2647030 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 336031 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 336031 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 661692 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1517511 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2349582 43596924 ~ 43597464 (+) True G1295348