RNA id: trnap-ugg-28


Basic Information

Item Value
RNA id trnap-ugg-28
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-28
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41257198 ~ 41257269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggactagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475441 lncRNA upstream 22179 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 31426 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 59421 41197095 ~ 41197777 (+) True G1292792
TU1475270 lncRNA upstream 80135 41176206 ~ 41177063 (+) True G1292775
TU1475269 lncRNA upstream 81478 41175464 ~ 41175720 (+) True G1292774
TU1475448 lncRNA downstream 1612 41258881 ~ 41385174 (+) True G1292939
TU1475451 lncRNA downstream 5099 41262368 ~ 41263796 (+) True G1292941
TU1475457 lncRNA downstream 31635 41288904 ~ 41384912 (+) False G1292944
TU1475454 lncRNA downstream 35001 41292270 ~ 41337809 (+) True G1292944
TU1475464 lncRNA downstream 103538 41360807 ~ 41381768 (+) True trnap-cgg-68
trnap-ugg-27 mRNA upstream 864 41256263 ~ 41256334 (+) True trnap-ugg-27
trnap-ugg-26 mRNA upstream 1799 41255328 ~ 41255399 (+) True trnap-ugg-26
trnap-ugg-25 mRNA upstream 2734 41254393 ~ 41254464 (+) True trnap-ugg-25
trnap-ugg-24 mRNA upstream 3669 41253458 ~ 41253529 (+) True trnap-ugg-24
trnap-ugg-23 mRNA upstream 5181 41251946 ~ 41252017 (+) True trnap-ugg-23
trnap-ugg-29 mRNA downstream 847 41258116 ~ 41258187 (+) True trnap-ugg-29
trnap-ugg-30 mRNA downstream 1765 41259034 ~ 41259105 (+) True trnap-ugg-30
trnap-ugg-31 mRNA downstream 2675 41259944 ~ 41260015 (+) True trnap-ugg-31
trnap-ugg-32 mRNA downstream 4546 41261815 ~ 41261886 (+) True trnap-ugg-32
trnap-ugg-33 mRNA downstream 5481 41262750 ~ 41262821 (+) True trnap-ugg-33
TU1473916 other upstream 1126464 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1189291 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2130189 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2219539 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2656957 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 326104 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 326104 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 651765 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1507584 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2339655 43596924 ~ 43597464 (+) True G1295348