RNA id: trnap-ugg-32


Basic Information

Item Value
RNA id trnap-ugg-32
length 72
RNA type mRNA
GC content 0.63
exon number 1
gene id trnap-ugg-32
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41261815 ~ 41261886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctagCTTTGGGtgtgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475441 lncRNA upstream 26796 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 36043 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 64038 41197095 ~ 41197777 (+) True G1292792
TU1475270 lncRNA upstream 84752 41176206 ~ 41177063 (+) True G1292775
TU1475269 lncRNA upstream 86095 41175464 ~ 41175720 (+) True G1292774
TU1475451 lncRNA downstream 482 41262368 ~ 41263796 (+) True G1292941
TU1475457 lncRNA downstream 27018 41288904 ~ 41384912 (+) False G1292944
TU1475454 lncRNA downstream 30384 41292270 ~ 41337809 (+) True G1292944
TU1475464 lncRNA downstream 98921 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475499 lncRNA downstream 145087 41406973 ~ 41407518 (+) True trnap-cgg-114
trnap-ugg-31 mRNA upstream 1800 41259944 ~ 41260015 (+) True trnap-ugg-31
trnap-ugg-30 mRNA upstream 2710 41259034 ~ 41259105 (+) True trnap-ugg-30
trnap-ugg-29 mRNA upstream 3628 41258116 ~ 41258187 (+) True trnap-ugg-29
trnap-ugg-28 mRNA upstream 4546 41257198 ~ 41257269 (+) True trnap-ugg-28
trnap-ugg-27 mRNA upstream 5481 41256263 ~ 41256334 (+) True trnap-ugg-27
trnap-ugg-33 mRNA downstream 864 41262750 ~ 41262821 (+) True trnap-ugg-33
trnap-ugg-34 mRNA downstream 1800 41263686 ~ 41263757 (+) True trnap-ugg-34
trnap-ugg-35 mRNA downstream 3021 41264907 ~ 41264978 (+) True trnap-ugg-35
trnap-ugg-36 mRNA downstream 3956 41265842 ~ 41265913 (+) True trnap-ugg-36
trnap-ugg-37 mRNA downstream 7664 41269550 ~ 41269621 (+) True trnap-ugg-37
TU1473916 other upstream 1131081 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1193908 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2134806 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2224156 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2661574 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 321487 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 321487 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 647148 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1502967 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2335038 43596924 ~ 43597464 (+) True G1295348