RNA id: trnap-ugg-35


Basic Information

Item Value
RNA id trnap-ugg-35
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-35
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41264907 ~ 41264978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctagCTTTGGGtgtgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475451 lncRNA upstream 1111 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 29888 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 39135 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 67130 41197095 ~ 41197777 (+) True G1292792
TU1475270 lncRNA upstream 87844 41176206 ~ 41177063 (+) True G1292775
TU1475457 lncRNA downstream 23926 41288904 ~ 41384912 (+) False G1292944
TU1475454 lncRNA downstream 27292 41292270 ~ 41337809 (+) True G1292944
TU1475464 lncRNA downstream 95829 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475499 lncRNA downstream 141995 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 142870 41407848 ~ 41408132 (+) True trnap-cgg-115
trnap-ugg-34 mRNA upstream 1150 41263686 ~ 41263757 (+) True trnap-ugg-34
trnap-ugg-33 mRNA upstream 2086 41262750 ~ 41262821 (+) True trnap-ugg-33
trnap-ugg-32 mRNA upstream 3021 41261815 ~ 41261886 (+) True trnap-ugg-32
trnap-ugg-31 mRNA upstream 4892 41259944 ~ 41260015 (+) True trnap-ugg-31
trnap-ugg-30 mRNA upstream 5802 41259034 ~ 41259105 (+) True trnap-ugg-30
trnap-ugg-36 mRNA downstream 864 41265842 ~ 41265913 (+) True trnap-ugg-36
trnap-ugg-37 mRNA downstream 4572 41269550 ~ 41269621 (+) True trnap-ugg-37
trnap-ugg-38 mRNA downstream 8236 41273214 ~ 41273285 (+) True trnap-ugg-38
trnap-ugg-39 mRNA downstream 9156 41274134 ~ 41274205 (+) True trnap-ugg-39
trnap-ugg-40 mRNA downstream 10074 41275052 ~ 41275122 (+) True trnap-ugg-40
TU1473916 other upstream 1134173 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1197000 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2137898 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2227248 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2664666 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 318395 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 318395 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 644056 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1499875 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2331946 43596924 ~ 43597464 (+) True G1295348