RNA id: trnap-ugg-37


Basic Information

Item Value
RNA id trnap-ugg-37
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-37
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41269550 ~ 41269621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttcgtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475451 lncRNA upstream 5754 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 34531 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 43778 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 71773 41197095 ~ 41197777 (+) True G1292792
TU1475270 lncRNA upstream 92487 41176206 ~ 41177063 (+) True G1292775
TU1475457 lncRNA downstream 19283 41288904 ~ 41384912 (+) False G1292944
TU1475454 lncRNA downstream 22649 41292270 ~ 41337809 (+) True G1292944
TU1475464 lncRNA downstream 91186 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475499 lncRNA downstream 137352 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 138227 41407848 ~ 41408132 (+) True trnap-cgg-115
trnap-ugg-36 mRNA upstream 3637 41265842 ~ 41265913 (+) True trnap-ugg-36
trnap-ugg-35 mRNA upstream 4572 41264907 ~ 41264978 (+) True trnap-ugg-35
trnap-ugg-34 mRNA upstream 5793 41263686 ~ 41263757 (+) True trnap-ugg-34
trnap-ugg-33 mRNA upstream 6729 41262750 ~ 41262821 (+) True trnap-ugg-33
trnap-ugg-32 mRNA upstream 7664 41261815 ~ 41261886 (+) True trnap-ugg-32
trnap-ugg-38 mRNA downstream 3593 41273214 ~ 41273285 (+) True trnap-ugg-38
trnap-ugg-39 mRNA downstream 4513 41274134 ~ 41274205 (+) True trnap-ugg-39
trnap-ugg-40 mRNA downstream 5431 41275052 ~ 41275122 (+) True trnap-ugg-40
trnap-ugg-41 mRNA downstream 6346 41275967 ~ 41276038 (+) True trnap-ugg-41
trnap-ugg-42 mRNA downstream 8187 41277808 ~ 41277879 (+) True trnap-ugg-42
TU1473916 other upstream 1138816 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1201643 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2142541 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2231891 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2669309 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 313752 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 313752 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 639413 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1495232 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2327303 43596924 ~ 43597464 (+) True G1295348