RNA id: trnap-cgg-66


Basic Information

Item Value
RNA id trnap-cgg-66
length 72
RNA type mRNA
GC content 0.63
exon number 1
gene id trnap-cgg-66
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41359211 ~ 41359282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475454 lncRNA upstream 21402 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 95415 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 124192 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 133439 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 161434 41197095 ~ 41197777 (+) True G1292792
TU1475464 lncRNA downstream 1525 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475499 lncRNA downstream 47691 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 48566 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 49467 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 59726 41419008 ~ 41419424 (+) True trnap-cgg-127
trnap-cgg-65 mRNA upstream 804 41358336 ~ 41358407 (+) True trnap-cgg-65
trnap-ugg-63 mRNA upstream 1679 41357461 ~ 41357532 (+) True trnap-ugg-63
trnap-cgg-64 mRNA upstream 2554 41356586 ~ 41356657 (+) True trnap-cgg-64
trnap-cgg-63 mRNA upstream 3421 41355719 ~ 41355790 (+) True trnap-cgg-63
trnap-cgg-62 mRNA upstream 5163 41353977 ~ 41354048 (+) True trnap-cgg-62
trnap-cgg-67 mRNA downstream 804 41360086 ~ 41360157 (+) True trnap-cgg-67
trnap-cgg-68 mRNA downstream 1679 41360961 ~ 41361032 (+) False trnap-cgg-68
trnap-cgg-69 mRNA downstream 2593 41361875 ~ 41361946 (+) True trnap-cgg-69
trnap-cgg-70 mRNA downstream 3468 41362750 ~ 41362821 (+) True trnap-cgg-70
trnap-cgg-71 mRNA downstream 4382 41363664 ~ 41363735 (+) True trnap-cgg-71
TU1473916 other upstream 1228477 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1291304 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2232202 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2321552 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2758970 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 224091 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 224091 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 549752 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1405571 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2237642 43596924 ~ 43597464 (+) True G1295348