RNA id: trnap-cgg-69


Basic Information

Item Value
RNA id trnap-cgg-69
length 72
RNA type mRNA
GC content 0.63
exon number 1
gene id trnap-cgg-69
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41361875 ~ 41361946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475454 lncRNA upstream 24066 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 98079 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 126856 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 136103 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 164098 41197095 ~ 41197777 (+) True G1292792
TU1475499 lncRNA downstream 45027 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 45902 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 46803 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 57062 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 82280 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-68 mRNA upstream 843 41360961 ~ 41361032 (+) False trnap-cgg-68
trnap-cgg-67 mRNA upstream 1718 41360086 ~ 41360157 (+) True trnap-cgg-67
trnap-cgg-66 mRNA upstream 2593 41359211 ~ 41359282 (+) True trnap-cgg-66
trnap-cgg-65 mRNA upstream 3468 41358336 ~ 41358407 (+) True trnap-cgg-65
trnap-ugg-63 mRNA upstream 4343 41357461 ~ 41357532 (+) True trnap-ugg-63
trnap-cgg-70 mRNA downstream 804 41362750 ~ 41362821 (+) True trnap-cgg-70
trnap-cgg-71 mRNA downstream 1718 41363664 ~ 41363735 (+) True trnap-cgg-71
trnap-cgg-72 mRNA downstream 2593 41364539 ~ 41364610 (+) True trnap-cgg-72
trnap-ugg-64 mRNA downstream 3468 41365414 ~ 41365485 (+) True trnap-ugg-64
trnap-cgg-73 mRNA downstream 4383 41366329 ~ 41366400 (+) True trnap-cgg-73
TU1473916 other upstream 1231141 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1293968 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2234866 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2324216 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2761634 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 221427 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 221427 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 547088 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1402907 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2234978 43596924 ~ 43597464 (+) True G1295348