RNA id: trnap-cgg-75


Basic Information

Item Value
RNA id trnap-cgg-75
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-cgg-75
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41368119 ~ 41368190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcttgttggtctaggggtatgattctcgcttcgggtgtgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475454 lncRNA upstream 30310 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 104323 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 133100 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 142347 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 170342 41197095 ~ 41197777 (+) True G1292792
TU1475499 lncRNA downstream 38783 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 39658 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 40559 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 50818 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 76036 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-74 mRNA upstream 804 41367244 ~ 41367315 (+) True trnap-cgg-74
trnap-cgg-73 mRNA upstream 1719 41366329 ~ 41366400 (+) True trnap-cgg-73
trnap-ugg-64 mRNA upstream 2634 41365414 ~ 41365485 (+) True trnap-ugg-64
trnap-cgg-72 mRNA upstream 3509 41364539 ~ 41364610 (+) True trnap-cgg-72
trnap-cgg-71 mRNA upstream 4384 41363664 ~ 41363735 (+) True trnap-cgg-71
trnap-cgg-76 mRNA downstream 844 41369034 ~ 41369105 (+) True trnap-cgg-76
trnap-cgg-77 mRNA downstream 1755 41369945 ~ 41370016 (+) True trnap-cgg-77
trnap-cgg-78 mRNA downstream 2630 41370820 ~ 41370891 (+) True trnap-cgg-78
trnap-cgg-79 mRNA downstream 3506 41371696 ~ 41371767 (+) True trnap-cgg-79
trnap-cgg-80 mRNA downstream 4420 41372610 ~ 41372681 (+) True trnap-cgg-80
TU1473916 other upstream 1237385 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1300212 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2241110 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2330460 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2767878 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 215183 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 215183 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 540844 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1396663 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2228734 43596924 ~ 43597464 (+) True G1295348