RNA id: trnap-cgg-88


Basic Information

Item Value
RNA id trnap-cgg-88
length 72
RNA type mRNA
GC content 0.63
exon number 1
gene id trnap-cgg-88
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41379700 ~ 41379771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475454 lncRNA upstream 41891 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 115904 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 144681 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 153928 41225537 ~ 41225772 (+) True G1292922
TU1475287 lncRNA upstream 181923 41197095 ~ 41197777 (+) True G1292792
TU1475499 lncRNA downstream 27202 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 28077 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 28978 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 39237 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 64455 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-87 mRNA upstream 844 41378785 ~ 41378856 (+) True trnap-cgg-87
trnap-cgg-86 mRNA upstream 1717 41377910 ~ 41377983 (+) True trnap-cgg-86
trnap-cgg-85 mRNA upstream 2594 41377035 ~ 41377106 (+) True trnap-cgg-85
trnap-cgg-84 mRNA upstream 3473 41376156 ~ 41376227 (+) True trnap-cgg-84
trnap-cgg-83 mRNA upstream 4348 41375281 ~ 41375352 (+) True trnap-cgg-83
trnap-cgg-89 mRNA downstream 804 41380575 ~ 41380646 (+) True trnap-cgg-89
trnap-cgg-90 mRNA downstream 1680 41381451 ~ 41381522 (+) True trnap-cgg-90
trnap-cgg-91 mRNA downstream 2555 41382326 ~ 41382397 (+) True trnap-cgg-91
trnap-cgg-92 mRNA downstream 3430 41383201 ~ 41383272 (+) True trnap-cgg-92
trnap-cgg-93 mRNA downstream 4305 41384076 ~ 41384147 (+) True trnap-cgg-93
TU1473916 other upstream 1248966 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1311793 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2252691 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2342041 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2779459 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 203602 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 203602 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 529263 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1385082 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2217153 43596924 ~ 43597464 (+) True G1295348