RNA id: trnap-cgg-92



Basic Information


Item Value
RNA id trnap-cgg-92
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-cgg-92
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41383201 ~ 41383272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtctcGGGTTCAAATCCCAGACGAGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1475464 lncRNA upstream 1433 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 45392 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 119405 41262368 ~ 41263796 (+) True G1292941
TU1475441 lncRNA upstream 148182 41234547 ~ 41235019 (+) True G1292932
TU1475431 lncRNA upstream 157429 41225537 ~ 41225772 (+) True G1292922
TU1475499 lncRNA downstream 23701 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 24576 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 25477 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 35736 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 60954 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-91 mRNA upstream 804 41382326 ~ 41382397 (+) True trnap-cgg-91
trnap-cgg-90 mRNA upstream 1679 41381451 ~ 41381522 (+) True trnap-cgg-90
trnap-cgg-89 mRNA upstream 2555 41380575 ~ 41380646 (+) True trnap-cgg-89
trnap-cgg-88 mRNA upstream 3430 41379700 ~ 41379771 (+) True trnap-cgg-88
trnap-cgg-87 mRNA upstream 4345 41378785 ~ 41378856 (+) True trnap-cgg-87
trnap-cgg-93 mRNA downstream 804 41384076 ~ 41384147 (+) True trnap-cgg-93
trnap-cgg-94 mRNA downstream 1679 41384951 ~ 41385023 (+) True trnap-cgg-94
trnap-cgg-95 mRNA downstream 2555 41385827 ~ 41385898 (+) True trnap-cgg-95
trnap-cgg-96 mRNA downstream 3429 41386701 ~ 41386772 (+) True trnap-cgg-96
trnap-cgg-97 mRNA downstream 4304 41387576 ~ 41387647 (+) True trnap-cgg-97
TU1473916 other upstream 1252467 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1315294 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2256192 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2345542 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2782960 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 200101 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 200101 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 525762 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1381581 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2213652 43596924 ~ 43597464 (+) True G1295348