RNA id: trnap-cgg-96


Basic Information

Item Value
RNA id trnap-cgg-96
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-cgg-96
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41386701 ~ 41386772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcctggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475448 lncRNA upstream 1527 41258881 ~ 41385174 (+) True G1292939
TU1475457 lncRNA upstream 1789 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 4933 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 48892 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 122905 41262368 ~ 41263796 (+) True G1292941
TU1475499 lncRNA downstream 20201 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 21076 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 21977 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 32236 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 57454 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-95 mRNA upstream 803 41385827 ~ 41385898 (+) True trnap-cgg-95
trnap-cgg-94 mRNA upstream 1678 41384951 ~ 41385023 (+) True trnap-cgg-94
trnap-cgg-93 mRNA upstream 2554 41384076 ~ 41384147 (+) True trnap-cgg-93
trnap-cgg-92 mRNA upstream 3429 41383201 ~ 41383272 (+) True trnap-cgg-92
trnap-cgg-91 mRNA upstream 4304 41382326 ~ 41382397 (+) True trnap-cgg-91
trnap-cgg-97 mRNA downstream 804 41387576 ~ 41387647 (+) True trnap-cgg-97
trnap-cgg-98 mRNA downstream 1678 41388450 ~ 41388521 (+) True trnap-cgg-98
trnap-cgg-99 mRNA downstream 2553 41389325 ~ 41389396 (+) True trnap-cgg-99
trnap-cgg-100 mRNA downstream 3427 41390199 ~ 41390270 (+) True trnap-cgg-100
trnap-cgg-101 mRNA downstream 4300 41391072 ~ 41391143 (+) True trnap-cgg-101
TU1473916 other upstream 1255967 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1318794 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2259692 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2349042 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2786460 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 196601 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 196601 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 522262 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1378081 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2210152 43596924 ~ 43597464 (+) True G1295348