RNA id: trnap-cgg-101


Basic Information

Item Value
RNA id trnap-cgg-101
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-cgg-101
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41391072 ~ 41391143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcctggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475448 lncRNA upstream 5898 41258881 ~ 41385174 (+) True G1292939
TU1475457 lncRNA upstream 6160 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 9304 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 53263 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 127276 41262368 ~ 41263796 (+) True G1292941
TU1475499 lncRNA downstream 15830 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 16705 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 17606 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 27865 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 53083 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-100 mRNA upstream 802 41390199 ~ 41390270 (+) True trnap-cgg-100
trnap-cgg-99 mRNA upstream 1676 41389325 ~ 41389396 (+) True trnap-cgg-99
trnap-cgg-98 mRNA upstream 2551 41388450 ~ 41388521 (+) True trnap-cgg-98
trnap-cgg-97 mRNA upstream 3425 41387576 ~ 41387647 (+) True trnap-cgg-97
trnap-cgg-96 mRNA upstream 4300 41386701 ~ 41386772 (+) True trnap-cgg-96
trnap-cgg-102 mRNA downstream 804 41391947 ~ 41392018 (+) True trnap-cgg-102
trnap-cgg-103 mRNA downstream 2551 41393694 ~ 41393765 (+) True trnap-cgg-103
trnap-cgg-104 mRNA downstream 3465 41394608 ~ 41394679 (+) True trnap-cgg-104
trnap-cgg-105 mRNA downstream 4339 41395482 ~ 41395553 (+) True trnap-cgg-105
trnap-cgg-106 mRNA downstream 5213 41396356 ~ 41396427 (+) True trnap-cgg-106
TU1473916 other upstream 1260338 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1323165 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2264063 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2353413 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2790831 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 192230 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 192230 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 517891 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1373710 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2205781 43596924 ~ 43597464 (+) True G1295348