RNA id: trnap-cgg-102


Basic Information

Item Value
RNA id trnap-cgg-102
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-cgg-102
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41391947 ~ 41392018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcctggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475448 lncRNA upstream 6773 41258881 ~ 41385174 (+) True G1292939
TU1475457 lncRNA upstream 7035 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 10179 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 54138 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 128151 41262368 ~ 41263796 (+) True G1292941
TU1475499 lncRNA downstream 14955 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 15830 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 16731 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 26990 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 52208 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-101 mRNA upstream 804 41391072 ~ 41391143 (+) True trnap-cgg-101
trnap-cgg-100 mRNA upstream 1677 41390199 ~ 41390270 (+) True trnap-cgg-100
trnap-cgg-99 mRNA upstream 2551 41389325 ~ 41389396 (+) True trnap-cgg-99
trnap-cgg-98 mRNA upstream 3426 41388450 ~ 41388521 (+) True trnap-cgg-98
trnap-cgg-97 mRNA upstream 4300 41387576 ~ 41387647 (+) True trnap-cgg-97
trnap-cgg-103 mRNA downstream 1676 41393694 ~ 41393765 (+) True trnap-cgg-103
trnap-cgg-104 mRNA downstream 2590 41394608 ~ 41394679 (+) True trnap-cgg-104
trnap-cgg-105 mRNA downstream 3464 41395482 ~ 41395553 (+) True trnap-cgg-105
trnap-cgg-106 mRNA downstream 4338 41396356 ~ 41396427 (+) True trnap-cgg-106
trnap-cgg-107 mRNA downstream 5209 41397227 ~ 41397298 (+) True trnap-cgg-107
TU1473916 other upstream 1261213 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1324040 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2264938 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2354288 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2791706 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 191355 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 191355 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 517016 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1372835 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2204906 43596924 ~ 43597464 (+) True G1295348