RNA id: trnap-cgg-105


Basic Information

Item Value
RNA id trnap-cgg-105
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-cgg-105
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41395482 ~ 41395553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcctggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475448 lncRNA upstream 10308 41258881 ~ 41385174 (+) True G1292939
TU1475457 lncRNA upstream 10570 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 13714 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 57673 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 131686 41262368 ~ 41263796 (+) True G1292941
TU1475499 lncRNA downstream 11420 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 12295 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 13196 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 23455 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 48673 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-104 mRNA upstream 803 41394608 ~ 41394679 (+) True trnap-cgg-104
trnap-cgg-103 mRNA upstream 1717 41393694 ~ 41393765 (+) True trnap-cgg-103
trnap-cgg-102 mRNA upstream 3464 41391947 ~ 41392018 (+) True trnap-cgg-102
trnap-cgg-101 mRNA upstream 4339 41391072 ~ 41391143 (+) True trnap-cgg-101
trnap-cgg-100 mRNA upstream 5212 41390199 ~ 41390270 (+) True trnap-cgg-100
trnap-cgg-106 mRNA downstream 803 41396356 ~ 41396427 (+) True trnap-cgg-106
trnap-cgg-107 mRNA downstream 1674 41397227 ~ 41397298 (+) True trnap-cgg-107
trnap-cgg-108 mRNA downstream 2681 41398234 ~ 41398305 (+) True trnap-cgg-108
trnap-cgg-109 mRNA downstream 3689 41399242 ~ 41399313 (+) True trnap-cgg-109
trnap-cgg-110 mRNA downstream 4556 41400109 ~ 41400180 (+) True trnap-cgg-110
TU1473916 other upstream 1264748 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1327575 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2268473 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2357823 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2795241 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 187820 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 187820 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 513481 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1369300 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2201371 43596924 ~ 43597464 (+) True G1295348