RNA id: trnap-cgg-111


Basic Information

Item Value
RNA id trnap-cgg-111
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-cgg-111
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41401844 ~ 41401915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctctcttcgggtgcgagaggtcctgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475448 lncRNA upstream 16670 41258881 ~ 41385174 (+) True G1292939
TU1475457 lncRNA upstream 16932 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 20076 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 64035 41292270 ~ 41337809 (+) True G1292944
TU1475451 lncRNA upstream 138048 41262368 ~ 41263796 (+) True G1292941
TU1475499 lncRNA downstream 5058 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475500 lncRNA downstream 5933 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475501 lncRNA downstream 6834 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 17093 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 42311 41444226 ~ 41444783 (+) True trnap-cgg-152
trnap-cgg-110 mRNA upstream 1664 41400109 ~ 41400180 (+) True trnap-cgg-110
trnap-cgg-109 mRNA upstream 2531 41399242 ~ 41399313 (+) True trnap-cgg-109
trnap-cgg-108 mRNA upstream 3539 41398234 ~ 41398305 (+) True trnap-cgg-108
trnap-cgg-107 mRNA upstream 4546 41397227 ~ 41397298 (+) True trnap-cgg-107
trnap-cgg-106 mRNA upstream 5417 41396356 ~ 41396427 (+) True trnap-cgg-106
trnap-cgg-112 mRNA downstream 2545 41404460 ~ 41404531 (+) True trnap-cgg-112
trnap-cgg-113 mRNA downstream 4300 41406215 ~ 41406287 (+) True trnap-cgg-113
trnap-cgg-114 mRNA downstream 5176 41407091 ~ 41407162 (+) False trnap-cgg-114
trnap-cgg-115 mRNA downstream 6051 41407966 ~ 41408037 (+) False trnap-cgg-115
trnap-cgg-116 mRNA downstream 6926 41408841 ~ 41408912 (+) False trnap-cgg-116
TU1473916 other upstream 1271110 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1333937 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2274835 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2364185 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2801603 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 181458 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 181458 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 507119 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1362938 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2195009 43596924 ~ 43597464 (+) True G1295348