RNA id: trnap-cgg-115


Basic Information

Item Value
RNA id trnap-cgg-115
length 72
RNA type mRNA
GC content 0.63
exon number 1
gene id trnap-cgg-115
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41407848 ~ 41408132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475499 lncRNA upstream 448 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475448 lncRNA upstream 22792 41258881 ~ 41385174 (+) True G1292939
TU1475457 lncRNA upstream 23054 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 26198 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 70157 41292270 ~ 41337809 (+) True G1292944
TU1475501 lncRNA downstream 712 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475503 lncRNA downstream 10971 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 36189 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475542 lncRNA downstream 102150 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 104038 41512075 ~ 41512941 (+) True G1293020
trnap-cgg-114 mRNA upstream 804 41407091 ~ 41407162 (+) False trnap-cgg-114
trnap-cgg-113 mRNA upstream 1679 41406215 ~ 41406287 (+) True trnap-cgg-113
trnap-cgg-112 mRNA upstream 3435 41404460 ~ 41404531 (+) True trnap-cgg-112
trnap-cgg-111 mRNA upstream 6051 41401844 ~ 41401915 (+) True trnap-cgg-111
trnap-cgg-110 mRNA upstream 7786 41400109 ~ 41400180 (+) True trnap-cgg-110
trnap-cgg-116 mRNA downstream 804 41408841 ~ 41408912 (+) False trnap-cgg-116
trnap-cgg-117 mRNA downstream 1643 41409680 ~ 41409751 (+) True trnap-cgg-117
trnap-cgg-118 mRNA downstream 2519 41410556 ~ 41410627 (+) True trnap-cgg-118
trnap-cgg-119 mRNA downstream 3382 41411419 ~ 41411490 (+) True trnap-cgg-119
trnap-cgg-120 mRNA downstream 5121 41413158 ~ 41413229 (+) True trnap-cgg-120
TU1473916 other upstream 1277232 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1340059 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2280957 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2370307 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2807725 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 175336 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 175336 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 500997 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1356816 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2188887 43596924 ~ 43597464 (+) True G1295348