RNA id: TU1475501


Basic Information

Item Value
RNA id TU1475501
length 341
lncRNA type sense_over
GC content 0.46
exon number 1
gene id trnap-cgg-116
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41408749 ~ 41409089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgttattcactgtggcctggcaccatcgacctgtcaatccaaatcctcactgtcattactggcgactgcaataaaaatgactttgataaaacggctcgttggtctaggggtatgattctctcttcgggtgcgagaggtcctgggttcaaatcccggacgagcccatgtgtagagcctttaacaatctgaaagaggcggttcttgggcaacagtttggagtgcagaccaaggtggatgagtgataaaggcaatggattgctaatccattgtgctctgcacttgtgggttcagcatcgcacagcatttattcatttcttccttggttaaaaaatctgtcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475500 lncRNA upstream 617 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 1231 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475457 lncRNA upstream 23837 41288904 ~ 41384912 (+) False G1292944
TU1475464 lncRNA upstream 26981 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475454 lncRNA upstream 70940 41292270 ~ 41337809 (+) True G1292944
TU1475503 lncRNA downstream 9919 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475510 lncRNA downstream 35137 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475542 lncRNA downstream 101098 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 102986 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 119381 41528470 ~ 41529058 (+) True G1293025
trnap-cgg-115 mRNA upstream 712 41407966 ~ 41408037 (+) False trnap-cgg-115
trnap-cgg-114 mRNA upstream 1587 41407091 ~ 41407162 (+) False trnap-cgg-114
trnap-cgg-113 mRNA upstream 2462 41406215 ~ 41406287 (+) True trnap-cgg-113
trnap-cgg-112 mRNA upstream 4218 41404460 ~ 41404531 (+) True trnap-cgg-112
trnap-cgg-111 mRNA upstream 6834 41401844 ~ 41401915 (+) True trnap-cgg-111
trnap-cgg-117 mRNA downstream 591 41409680 ~ 41409751 (+) True trnap-cgg-117
trnap-cgg-118 mRNA downstream 1467 41410556 ~ 41410627 (+) True trnap-cgg-118
trnap-cgg-119 mRNA downstream 2330 41411419 ~ 41411490 (+) True trnap-cgg-119
trnap-cgg-120 mRNA downstream 4069 41413158 ~ 41413229 (+) True trnap-cgg-120
trnap-cgg-121 mRNA downstream 4908 41413997 ~ 41414068 (+) True trnap-cgg-121
TU1473916 other upstream 1278015 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1340842 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2281740 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2371090 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2808508 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 174284 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 174284 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 499945 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1355764 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2187835 43596924 ~ 43597464 (+) True G1295348

Expression Profile