RNA id: trnap-cgg-132


Basic Information

Item Value
RNA id trnap-cgg-132
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-cgg-132
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41423626 ~ 41423697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcctgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475503 lncRNA upstream 4202 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475501 lncRNA upstream 14537 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475500 lncRNA upstream 15494 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 16108 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475464 lncRNA upstream 41858 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475510 lncRNA downstream 20529 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475542 lncRNA downstream 86490 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 88378 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 104773 41528470 ~ 41529058 (+) True G1293025
TU1475550 lncRNA downstream 105470 41529167 ~ 41529827 (+) True G1293027
trnap-cgg-131 mRNA upstream 804 41422751 ~ 41422822 (+) True trnap-cgg-131
trnap-cgg-130 mRNA upstream 1679 41421876 ~ 41421947 (+) True trnap-cgg-130
trnap-cgg-129 mRNA upstream 2554 41421001 ~ 41421072 (+) True trnap-cgg-129
trnap-cgg-128 mRNA upstream 3429 41420126 ~ 41420197 (+) True trnap-cgg-128
trnap-cgg-127 mRNA upstream 4304 41419251 ~ 41419322 (+) False trnap-cgg-127
trnap-cgg-133 mRNA downstream 1653 41425350 ~ 41425421 (+) True trnap-cgg-133
trnap-cgg-134 mRNA downstream 2528 41426225 ~ 41426296 (+) True trnap-cgg-134
trnap-cgg-135 mRNA downstream 4278 41427975 ~ 41428046 (+) True trnap-cgg-135
trnap-cgg-136 mRNA downstream 5117 41428814 ~ 41428885 (+) True trnap-cgg-136
trnap-cgg-137 mRNA downstream 5975 41429672 ~ 41429743 (+) True trnap-cgg-137
TU1473916 other upstream 1292892 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1355719 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2296617 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2385967 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2823385 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 159676 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 159676 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 485337 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1341156 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2173227 43596924 ~ 43597464 (+) True G1295348