RNA id: trnap-ugg-65


Basic Information

Item Value
RNA id trnap-ugg-65
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-65
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41433043 ~ 41433114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475503 lncRNA upstream 13619 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475501 lncRNA upstream 23954 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475500 lncRNA upstream 24911 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 25525 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475464 lncRNA upstream 51275 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475510 lncRNA downstream 11112 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475542 lncRNA downstream 77073 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 78961 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 95356 41528470 ~ 41529058 (+) True G1293025
TU1475550 lncRNA downstream 96053 41529167 ~ 41529827 (+) True G1293027
trnap-cgg-139 mRNA upstream 777 41432195 ~ 41432266 (+) True trnap-cgg-139
trnap-cgg-138 mRNA upstream 1616 41431356 ~ 41431427 (+) True trnap-cgg-138
trnap-cgg-137 mRNA upstream 3300 41429672 ~ 41429743 (+) True trnap-cgg-137
trnap-cgg-136 mRNA upstream 4158 41428814 ~ 41428885 (+) True trnap-cgg-136
trnap-cgg-135 mRNA upstream 4997 41427975 ~ 41428046 (+) True trnap-cgg-135
trnap-cgg-140 mRNA downstream 768 41433882 ~ 41433953 (+) True trnap-cgg-140
trnap-cgg-141 mRNA downstream 1626 41434740 ~ 41434811 (+) True trnap-cgg-141
trnap-cgg-142 mRNA downstream 2500 41435614 ~ 41435685 (+) True trnap-cgg-142
trnap-cgg-143 mRNA downstream 3360 41436474 ~ 41436545 (+) True trnap-cgg-143
trnap-cgg-144 mRNA downstream 4222 41437336 ~ 41437407 (+) True trnap-cgg-144
TU1473916 other upstream 1302309 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1365136 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2306034 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2395384 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2832802 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 150259 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 150259 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 475920 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1331739 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2163810 43596924 ~ 43597464 (+) True G1295348