RNA id: trnap-cgg-143


Basic Information

Item Value
RNA id trnap-cgg-143
length 72
RNA type mRNA
GC content 0.63
exon number 1
gene id trnap-cgg-143
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41436474 ~ 41436545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475503 lncRNA upstream 17050 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475501 lncRNA upstream 27385 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475500 lncRNA upstream 28342 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 28956 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475464 lncRNA upstream 54706 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475510 lncRNA downstream 7681 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475542 lncRNA downstream 73642 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 75530 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 91925 41528470 ~ 41529058 (+) True G1293025
TU1475550 lncRNA downstream 92622 41529167 ~ 41529827 (+) True G1293027
trnap-cgg-142 mRNA upstream 789 41435614 ~ 41435685 (+) True trnap-cgg-142
trnap-cgg-141 mRNA upstream 1663 41434740 ~ 41434811 (+) True trnap-cgg-141
trnap-cgg-140 mRNA upstream 2521 41433882 ~ 41433953 (+) True trnap-cgg-140
trnap-ugg-65 mRNA upstream 3360 41433043 ~ 41433114 (+) True trnap-ugg-65
trnap-cgg-139 mRNA upstream 4208 41432195 ~ 41432266 (+) True trnap-cgg-139
trnap-cgg-144 mRNA downstream 791 41437336 ~ 41437407 (+) True trnap-cgg-144
trnap-cgg-145 mRNA downstream 1653 41438198 ~ 41438269 (+) True trnap-cgg-145
trnap-cgg-146 mRNA downstream 2568 41439113 ~ 41439184 (+) True trnap-cgg-146
trnap-cgg-147 mRNA downstream 3442 41439987 ~ 41440058 (+) True trnap-cgg-147
trnap-cgg-148 mRNA downstream 4302 41440847 ~ 41440918 (+) True trnap-cgg-148
TU1473916 other upstream 1305740 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1368567 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2309465 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2398815 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2836233 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 146828 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 146828 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 472489 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1328308 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2160379 43596924 ~ 43597464 (+) True G1295348