RNA id: trnap-cgg-150


Basic Information

Item Value
RNA id trnap-cgg-150
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-cgg-150
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41442571 ~ 41442642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtcctgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475503 lncRNA upstream 23147 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475501 lncRNA upstream 33482 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475500 lncRNA upstream 34439 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 35053 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475464 lncRNA upstream 60803 41360807 ~ 41381768 (+) True trnap-cgg-68
TU1475510 lncRNA downstream 1584 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475542 lncRNA downstream 67545 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 69433 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 85828 41528470 ~ 41529058 (+) True G1293025
TU1475550 lncRNA downstream 86525 41529167 ~ 41529827 (+) True G1293027
trnap-cgg-149 mRNA upstream 791 41441709 ~ 41441780 (+) True trnap-cgg-149
trnap-cgg-148 mRNA upstream 1653 41440847 ~ 41440918 (+) True trnap-cgg-148
trnap-cgg-147 mRNA upstream 2513 41439987 ~ 41440058 (+) True trnap-cgg-147
trnap-cgg-146 mRNA upstream 3387 41439113 ~ 41439184 (+) True trnap-cgg-146
trnap-cgg-145 mRNA upstream 4302 41438198 ~ 41438269 (+) True trnap-cgg-145
trnap-cgg-151 mRNA downstream 831 41443473 ~ 41443544 (+) True trnap-cgg-151
trnap-cgg-152 mRNA downstream 1693 41444335 ~ 41444406 (+) False trnap-cgg-152
trnap-cgg-153 mRNA downstream 2594 41445236 ~ 41445307 (+) True trnap-cgg-153
trnap-cgg-154 mRNA downstream 3495 41446137 ~ 41446208 (+) True trnap-cgg-154
trnap-agg-153 mRNA downstream 4396 41447038 ~ 41447109 (+) True trnap-agg-153
TU1473916 other upstream 1311837 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1374664 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2315562 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2404912 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2842330 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 140731 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 140731 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 466392 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1322211 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2154282 43596924 ~ 43597464 (+) True G1295348