RNA id: trnap-agg-153


Basic Information

Item Value
RNA id trnap-agg-153
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-agg-153
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41447038 ~ 41447109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475510 lncRNA upstream 2255 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475503 lncRNA upstream 27614 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475501 lncRNA upstream 37949 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475500 lncRNA upstream 38906 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 39520 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475542 lncRNA downstream 63078 41510187 ~ 41510710 (+) True G1293019
TU1475543 lncRNA downstream 64966 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 81361 41528470 ~ 41529058 (+) True G1293025
TU1475550 lncRNA downstream 82058 41529167 ~ 41529827 (+) True G1293027
TU1475554 lncRNA downstream 86171 41533280 ~ 41533826 (+) True trnap-cgg-205
trnap-cgg-154 mRNA upstream 830 41446137 ~ 41446208 (+) True trnap-cgg-154
trnap-cgg-153 mRNA upstream 1731 41445236 ~ 41445307 (+) True trnap-cgg-153
trnap-cgg-152 mRNA upstream 2632 41444335 ~ 41444406 (+) False trnap-cgg-152
trnap-cgg-151 mRNA upstream 3494 41443473 ~ 41443544 (+) True trnap-cgg-151
trnap-cgg-150 mRNA upstream 4396 41442571 ~ 41442642 (+) True trnap-cgg-150
trnap-agg-154 mRNA downstream 830 41447939 ~ 41448010 (+) True trnap-agg-154
trnap-cgg-155 mRNA downstream 1731 41448840 ~ 41448911 (+) True trnap-cgg-155
trnap-cgg-156 mRNA downstream 2632 41449741 ~ 41449812 (+) True trnap-cgg-156
trnap-cgg-157 mRNA downstream 3533 41450642 ~ 41450713 (+) True trnap-cgg-157
trnap-cgg-158 mRNA downstream 4434 41451543 ~ 41451614 (+) True trnap-cgg-158
TU1473916 other upstream 1316304 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1379131 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2320029 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2409379 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2846797 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 136264 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 136264 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 461925 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1317744 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2149815 43596924 ~ 43597464 (+) True G1295348