RNA id: trnap-cgg-207


Basic Information

Item Value
RNA id trnap-cgg-207
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnap-cgg-207
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41537424 ~ 41537495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtataattctcgcttcgggtgcgagaggtcccgggttcaaatcacGGATGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475554 lncRNA upstream 3598 41533280 ~ 41533826 (+) True trnap-cgg-205
TU1475550 lncRNA upstream 7597 41529167 ~ 41529827 (+) True G1293027
TU1475548 lncRNA upstream 8366 41528470 ~ 41529058 (+) True G1293025
TU1475543 lncRNA upstream 24483 41512075 ~ 41512941 (+) True G1293020
TU1475542 lncRNA upstream 26714 41510187 ~ 41510710 (+) True G1293019
TU1475568 lncRNA downstream 7403 41544898 ~ 41545622 (+) True G1293045
TU1475580 lncRNA downstream 16039 41553534 ~ 41553948 (+) True G1293056
TU1475614 lncRNA downstream 40334 41577829 ~ 41578216 (+) True G1293084
TU1475599 lncRNA downstream 45721 41583216 ~ 41588144 (+) False G1293072
TU1475601 lncRNA downstream 45788 41583283 ~ 41588144 (+) False G1293072
trnap-cgg-206 mRNA upstream 1732 41535621 ~ 41535692 (+) True trnap-cgg-206
trnap-cgg-205 mRNA upstream 3583 41533770 ~ 41533841 (+) False trnap-cgg-205
trnap-cgg-204 mRNA upstream 9723 41527630 ~ 41527701 (+) True trnap-cgg-204
trnap-cgg-203 mRNA upstream 12391 41524962 ~ 41525033 (+) True trnap-cgg-203
trnap-cgg-202 mRNA upstream 21408 41515945 ~ 41516016 (+) True trnap-cgg-202
XM_021563213.2 mRNA downstream 20153 41557648 ~ 41567851 (+) False LOC110490071
XM_021563212.2 mRNA downstream 20171 41557666 ~ 41567851 (+) True LOC110490071
XM_021563215.2 mRNA downstream 45840 41583335 ~ 41588120 (+) True LOC110490073
XM_036945536.1 mRNA downstream 50968 41588463 ~ 41625040 (+) True LOC110490072
XM_021563226.2 mRNA downstream 272748 41810243 ~ 41836130 (+) False iqcg
TU1473916 other upstream 1406690 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1469517 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2410415 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2499765 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2937183 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 45878 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 45878 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 371539 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1227358 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2059429 43596924 ~ 43597464 (+) True G1295348