RNA id: XM_036945536.1


Basic Information

Item Value
RNA id XM_036945536.1
length 3674
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110490072
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41588463 ~ 41625040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTACTCTGTCTTGGAAAGCAACTTAATCAGAACCACACATTTACACTTTCGATGGAAACTTTGCGGGCTTGGACATCAAACCCGGAAGAGAACTGACGTTAATAAGCGAGACTAGCTGCGTTTACACAGACAGTGCGACCATGGAAGCAAAAGCACACAGTTGTCACCGACTGCCTGGGAAAACAtcaagaaagaggaggagggatgaaatcaatggagagatggagggagagcaggCCGTCAAGGTCCGACGATCCACAGTGggtCTGACAGATCCAGACCCATTTGCTGACCAGCTAGAACCAGTTACCGCTCCGTACGTGCGTGTCAGTATGGCGGAGGCATGCCAGGGCACCCCACAAGAGCGTCCAGTGCGGGTATATGCAGATGGGATCTTTGACATGTTCCATTCCGGCCACGCCCGAGCACTGATGCAAGCCAAGGGGCTCTTCCCAAACACCCATTTAATTGTCGGAGAAGGGGCAAAGGCATCTCTGAATGTCACTTTTGCCAAGTTATCCTCACTCCTATACATTCTGtccccaaggattggaaagctgccgcagtcatccccctcttcaaagATTGACTTTGTCGCCCATGACGATTACCCATATTCTTCTGCAGGAAGTGACGATGTTTACAAGCACATCAAGGCGGCAGGCATGTTCGCACCCACACAGCGGACAGAAGGCATCTCCACTTCTGACATCATCACCCGTATTGTCCGCGACTACGACGTGTACGCACGCAGAAACCTGCAGAGAGGCTACACTGCCAAAGAGCTCAATGTCAGCTTCATCAATGAGAAGAAGTACCACCTGCAGGAGCGTGTGGACAAAGTGAAGAAGAGGGTGAAGGATGTGGAGGAGCGATCCAAAGAGTTTGTGCAGAAGGTAGAGACAAAGAGCATCGACCTGATCCAGAAGTGGGAAGAGAAGTCCCGAGAGTTCATCGCCAACTTCCTTCAAATGTTTGGCCCAGAGGGAGCACTGAAGCACATGCTAAAGGAGGGCAAGGGGCGGATGCTGCAAGCCATAAGCCCCAGGCAGAGCCCCAACAGCAGCCCGACCAGAGAGCGCTCACCCTCTCCGCCGCCCTCCTTCCGTCTGCCCTTCTTCACCAagacctcccctccctcttcgcCCCACCACCTCAGTGGAGCAGACCGCATAAGCGAGGATGACGATTAGGAGCCTCCCTCcattcctttctctccctgtggCTGAGATGgtgcaggttagggttagggtaaataccATTTCATTTCAGTCAATttattgaattgaaatggaattgacccccagCCCAAGTGCTCACAAGGAATTGATAATTCACATGCTCTTGAATTAGGATGCCATGTTGCGTTTTTTTCCTATCCCGCTCACATTACTGGTTATCTTTACCAGGCCTCTAGTGTCAGTCAGGCCTTTGTCATGTTTAAAGGAAACCACAACACAATAGCACAGGAAGTTTAATCATAACTTTCTGTAAAACTGCTGTTCTTCGGGGTCACAGTGTTGTTATACACAaaatagattttttaaatgtttcatttATGATGTATAAAATGAACATGGGAAGGTGTCAGCCAATACGGGCGTGAGTGATGGGACACTCATTCGCTCACAAATTACTTGCATGTTCTTCCGACACACACACTACTATGGATTTGCCATGCTAAATCCATAGTAGCGCCAGAGAAAATTGAACAAGTGATAACCGGTACTTTCTGTAAATAATATCTTTCTACTTTCCAATTGATTTCATTCTGAATTTTCCTTATGGGAGTCACATGAAGTAATCGCTTAAGTCGTCTGGATTTTTAAACTTCTCTGGTGAAAGCATAATTCacatggcacgacaatgggtaaGAAGCTATTGAATCTACTAGGGGTTAACCATCGTACCGGAGTGTACGGAGCCCCTTCCCTGTTTCCCAGTCTAAAACTAGCCGGCACCTCATACCAGCTGTCTGCCTTTTTATCCCATAACAAAAGCTGGTTTCAAAcatggggagggaggggacatggGAGAGTTTCCTCCAATATGAAGCAGTAGAATgccatccctcctccccctccctctagtGATCACGCTACAGGAGCAACACAGCAGCCTGTTGTTATCAATGAAAGACATAGTGAGCCTCCCTCCCCTCATAGATGCATTCTCTTCAACTGCCTCCACAGAAAAAGACCACTTGGGTAGAAAGAAAGCCTTGTGCAGAATTCCGAATACCCCCATAGCCACCTACCACCCCTTAGGGCCTaggcactcctgtagatctgaaaggaTGGGATAGCTTTTGCGTTCTGGCTGGGTGGCATTTGCACTGTGTTGGATACACCTATTCAGTCCTTTTAGGCCTAGGACACACTGAGGTTGTACAACTGATGTACAATGCATTGGACTCGACAGTTGTGATGCAATGGATATTGTTTTTAACGGAAACGTTTAAAATATTGTTGTTTGGTGTCTCCAGAGTGGTTGGGTAAATATTTGTGTGCAGACAAATGCATAAAAATACCTGTTGTATCAAATGCGTTGTACAACCTGATGTGAACTAGGCCAGTAGACCTACAGGTGGCCTAAGGCTGTTCCACTTGCTCAGGAGTGAAGTTCCACTAgggacagatctaggatcagcttcctctcCCAATACACACTAATCCCATTAGTggagaaaatgctaaactgacccaagatcagggGAAACTTGATCCATTCTGCTTAATAACCTCCCGACTCTGTAACTGTAATTAGGTTGATCGAGGACTTTTGATTACATTGGTCACCTGATTAGTCACCAAGTTGAGTTGTTTTATCCTTGTATTTTGTCATTTACTTTTATTTAATATGTACTAAGTGTGTTGGTTTGCGTTAAAAGAGATCTACTGTATGTACTTTCATCTTGTATAGATGTCATTTTTGTATACCTCCTGGAAAAACCTTCTGCtgatttttcttatttttttgttgttgtagaaaatagtaattcCACTAATCAGTAATTCCAAATGCATTGCGCATCTCTACAACTTTATTGCAATAGATTCCAAATAATTGTTTTGGGGGGGtgatttattagattttttttccagaGTGCTGATGCTATGTCTAATCAGAGCTGCATTGTGGCATTCCTCCCAGACATtattttttttcaacagaattaaTGTTTAAGCTTAGCCAGAGTCTGTGGTTATTCAAATCGTTATATTGTGAATTGTATTCTCTGAAGCAAGCAACTTTAGGCACTTATACAATAGTATGTGAAATATTATTCTGCGTTTACACGGGCAGCTCAGCccgattctgatatttttttcactaattgttattttgaccaatcagatcatctctgaaaaagatctgatgtggaagaaagatcagaattggtctgcctgtgttgtgttcaattgaaatactgtagaattccattcattcctatggaggactgctcctactggggagtgccaatattgCCGACCTGTGGCTTCAaggcctctcaatggccaatataTGGCATCTGCAATCCAGGctttgtacagtgcatttggaaagtattcagaccacttgactatttctacattttgttaagttacagccttattctaaaatggatcaaatagttttttcccctcatcaatctacacacaataccccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475599 lncRNA upstream 319 41583216 ~ 41588144 (+) False G1293072
TU1475601 lncRNA upstream 319 41583283 ~ 41588144 (+) False G1293072
TU1475596 lncRNA upstream 319 41583373 ~ 41588144 (+) False G1293072
TU1475597 lncRNA upstream 376 41583373 ~ 41588087 (+) False G1293072
TU1475614 lncRNA upstream 10247 41577829 ~ 41578216 (+) True G1293084
TU1475604 lncRNA downstream 21 41625061 ~ 41626045 (+) True G1293074
TU1475607 lncRNA downstream 1082 41626122 ~ 41626379 (+) True G1293077
TU1475707 lncRNA downstream 108436 41733476 ~ 41735494 (+) True G1293169
TU1475712 lncRNA downstream 115306 41740346 ~ 41749693 (+) True G1293174
TU1475766 lncRNA downstream 180649 41805689 ~ 41809344 (+) False G1293224
XM_021563215.2 mRNA upstream 343 41583335 ~ 41588120 (+) True LOC110490073
XM_021563213.2 mRNA upstream 20612 41557648 ~ 41567851 (+) False LOC110490071
XM_021563212.2 mRNA upstream 20612 41557666 ~ 41567851 (+) True LOC110490071
trnap-cgg-207 mRNA upstream 50968 41537424 ~ 41537495 (+) True trnap-cgg-207
trnap-cgg-206 mRNA upstream 52771 41535621 ~ 41535692 (+) True trnap-cgg-206
XM_021563226.2 mRNA downstream 185203 41810243 ~ 41836130 (+) False iqcg
XM_021563224.2 mRNA downstream 185216 41810256 ~ 41836130 (+) False iqcg
XM_021563223.2 mRNA downstream 185226 41810266 ~ 41836130 (+) True iqcg
XM_021563229.2 mRNA downstream 300134 41925174 ~ 41951832 (+) True LOC110490081
XR_005036313.1 mRNA downstream 394436 42019476 ~ 42023326 (+) True LOC118938919
TU1475600 other upstream 319 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 376 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 1457729 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1520556 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2461454 39126272 ~ 39127009 (+) True G1290614
TU1475855 other downstream 283994 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1139813 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1971884 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 2291138 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 2404396 44029436 ~ 44029861 (+) True G1295845

Expression Profile