RNA id: XM_021563224.2


Basic Information

Item Value
RNA id XM_021563224.2
length 1628
RNA type mRNA
GC content 0.49
exon number 10
gene id iqcg
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41810243 ~ 41836130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaactattcAGTTGTCATTGTATTGCATTCTCTTACGTTTCACACAACATAATAATCGAAGTAGATAAGAATttgtcattttttaaaaacaataaTCAAATGTTGTGCGTTACCAGGGTGACCGGGGTAAACTACCAAGTGTGCTGCTAGGCTAGCTAAACTATGCTCGAGTTAAACtactggccttttattgtccataAATACAGCTAGTAAACTTCAACACGTTCCGTGAAGACACTGCTCACAGACCACCAGGATGCCGGTTCCTTTGTCTGGGGTAGAGCTGCTCGGACTGTGTACAGTGCTCCAGGACTGTGCTGCACAGCTGTCAGTGCTGGGTCACATCATGCCCGACACCCACAGAGGTCGTCCAGAAGCTGATAAGTTTGTGTCAGCTGACATTGGACAGGTCCTTGAACAGCAGAAAGGGGCAGAGCAGAACCTGAAAGCAGCCCGTCAGTTTGAGAGAGAGTCTGGGAGACTGTCAGATGCCACCCGCGAGCTGCACAGATCCCAGAAGGAACTGAACCGCACACTAGAGGAGAATCCACTGTCCCCTGACAACCTGGCCAAGGTGCAGAGAGACCGtCAGTTTGTGGCTCACGTGATTGCTGATGTGTTGGCAGAGCTGCAAGAGAGAGGGACCTTTCACAGCTTGCTTTTCGCTGTGGGAGAAGAGAAAAGAAGGAAGGCCAACCTCCTGGACATAATAATCAGGGAGGAGGGCGGCCGGCGGAAGACCAAAGCTCTTCAGAGACAGCTGCTTGACATCCGCAAGGAAAAAACTCTGGAGCTGCAGCGACGCGAGGAGATGACTGCCCACCTGAAAGACCAACTACAGGAGATGAAGGCTAAGACTGGCCTGGAGAGGAAGTATGTGAAGAGCAGCGCGGAGCTGCTGGTGTACCAGGGACAGAAGATCAACACACACTCTGAGAAGCAGCTGGAGGATGAGATCAGGCAGGAGAggttggaggaggagaggagagttcaTATGGAGATGGAGACTTTCCTCAAGGAACATCAGACAAGTCTGGGGGAGAAGCTGGAGGTGTGGATGGAGCGCTatgagagagacatggaggataAGCAGCAGGAGCTTAACAGCCTGAGGAACAACAAAGCTAACAATCTCTCCCAGCTCCAGGAGCTGGCCAAGAAGTATAGAGACAGTGAGCAGGTGGTCATCGAGGACAGGATGGAGAAAGAGGCCCTACGCAGGAAGCTGGAGAAGGAACACATGGAGCGAGACGCAGCCACCAAGATCCAGTCGTGGTGGAGGGGAACGTTAGTGCGACGCGGCCTGGGACCCTATAAGAAAGGCAAGAAGCCCAAGGAGGGCAAGAAGGGAAAGAAGAAAAAGTGAGGTGTCCCTTCAAGAGCTCCAAAAAGTCTCAATACAGACATGTTACTTTTCATCAATGTTCAATTCCTGATTACAGACAATCTAAGTCGACACTTGGCCTGTAGGCAAATATATATTCAATGAGAAAAGCTTTTTTCCCCTCTTTAACAGAGTAAAGTTGGCATGGTCATTTtgaatactactaccaccattgcAAGGTTCTTACTTATATGCAGTCTAACACAAGGGCAAGAATGGTAATAAACAAGCGTACTCATGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475771 lncRNA upstream 84 41805689 ~ 41810172 (+) False G1293224
TU1475773 lncRNA upstream 84 41805689 ~ 41810172 (+) True G1293224
TU1475766 lncRNA upstream 912 41805689 ~ 41809344 (+) False G1293224
TU1475712 lncRNA upstream 60563 41740346 ~ 41749693 (+) True G1293174
TU1475707 lncRNA upstream 74762 41733476 ~ 41735494 (+) True G1293169
TU1475819 lncRNA downstream 26086 41862216 ~ 41866725 (+) True G1293261
TU1475876 lncRNA downstream 111184 41947314 ~ 41948368 (+) False G1293315
TU1475875 lncRNA downstream 111384 41947514 ~ 41948368 (+) True G1293315
TU1476180 lncRNA downstream 167248 42003378 ~ 42003587 (+) True G1293597
TU1476186 lncRNA downstream 173401 42009531 ~ 42050808 (+) True G1293603
XM_036945536.1 mRNA upstream 185216 41588463 ~ 41625040 (+) True LOC110490072
XM_021563215.2 mRNA upstream 222136 41583335 ~ 41588120 (+) True LOC110490073
XM_021563213.2 mRNA upstream 242405 41557648 ~ 41567851 (+) False LOC110490071
XM_021563212.2 mRNA upstream 242405 41557666 ~ 41567851 (+) True LOC110490071
trnap-cgg-207 mRNA upstream 272761 41537424 ~ 41537495 (+) True trnap-cgg-207
XM_021563229.2 mRNA downstream 89044 41925174 ~ 41951832 (+) True LOC110490081
XR_005036313.1 mRNA downstream 183346 42019476 ~ 42023326 (+) True LOC118938919
XM_036944383.1 mRNA downstream 203824 42039954 ~ 42054610 (+) False LOC110490085
XM_021563237.2 mRNA downstream 212469 42048599 ~ 42054610 (+) True LOC110490085
XM_021563239.2 mRNA downstream 318161 42154291 ~ 42255013 (+) False LOC110490086
TU1475600 other upstream 222112 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 222169 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 1679522 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1742349 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2683247 39126272 ~ 39127009 (+) True G1290614
TU1475855 other downstream 72904 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 928723 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1760794 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 2080048 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 2193306 44029436 ~ 44029861 (+) True G1295845

Expression Profile