RNA id: XM_021563229.2


Basic Information

Item Value
RNA id XM_021563229.2
length 3420
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110490081
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41925174 ~ 41951832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCGCATATTGTGGGCACATGCGCTGTTCTTGTGGATGCGCCGGTGTATCATGGCGACATACGTGGATATTCTGAAGAGCGAGTTTCCCGAAATTGACACCGAAGTGTTCGAATATATTACGGGTGTGTTGGACTGTGGAGGGGTGGAGtttgaggatggagaggaggtgtATGATGCGATTGGTGGGCTGCTGCAGGGGTCATCGGCTGACTGTAAAAACGAGGATGACATCCGGGACATCTGTCAGCAGATGTTCAACACTCTTAAACTGAGTAACGGCCATGCCGCTTCAAAGCAAGTGCTGCTCGACACTCCGGTGCAGTTGTCTCAGATATCTGCAGAGTGTGTATCTGTCACTAACGATGTCCAAGGGATCTGGATGATGAAGAGGGGCCAGAATACAACGGTGGACGCAAGGAAGCTAGAGAAGGCCGAAGCCAAGCTGAAGCAAAAACAAGGGAGGAGGAATGAACGGGATTCACAAAAAACAACTAGTCCACTGGTACTGGAGGAGGCATCAGCCAGCCAGGCCAGTAGCAAAAAGGACAGTCGCGTCGACTTGTCCGGGAAGAATCGCACCTACGACATCCGCATCGAGAACTTTGACGTGTCGTTTGGCGAGCGGTCCTTGCTGCAGGCGGCGGAGCTGTCGCTGTCGACAGGTCGCCGCTACGGCCTGATTGGCCGCAACGGCCTTGGGAAGACCACGCTACTGAAGATGCTGGCGAGCCGCAGCCTGCGCGTCCCCGCCCACATCACGATCCTGCACGTGGAGCAGGAGGTCGCTGGCGACGACACAGGGGCACTGCAGAGCGTGCTTGAGAGCGACACGGTCCGGGAGGGGCTCCTGACGGAGGAACGCCTGCTGAATGCGCGCATAGCCAACGGAACTGCTGAAGGAATGGAGACTGTTCGACTGTCGGAGATCTATGCTAAACTGGAGGAGATTGAAGCAGATAAGGCACCTGCCCGTGCTTCAATCATCCTATGTGGTTTAGGTTTTTCTCCCAAAATGCAAACGCTGACAACCAAGGAGTTTTCTGGAGGGTGGCGAATGAGATTAGCTCTGGCTAGAGCTCTCTTCGCCAAGCCTGATCTTTTGTTACTTGATGAGCCCACCAACATGTTGGATGTCCGAGCCATTCTTTGGCTGGAGAATTACCTGCAGACCTGGCAGACCACCATCCTGGTGGTGTCCCACGACCGGAACTTCCTCAACGCCGTGGTGACTGACATCATCCACCTGCACTCGCAGCGGCTGGAGAGTTACCGCGGCGACTACGAGAACTTTGTCAAGACCAAAGAGGACCGCCTGAAGAACCAGCAGAGGGAGTACGAGGCCCAGTTTCAGTACAGAGAGCACATCCAGGTGTTTATCGACCGGTTCAGATACAACGCCAACAGAGCGGCACAGGTGCAGAGCAAACTGAAGCTCTTAGAAAAACTGCCTGAACTCAAACCTCTGGAGAAGGAAACCGAAGTCACCTTAAAGTTCCCTGATAACTTTGAGAAGCTGTCTCCCCCGGTGCTCCAGTTGGATGAGGtggagttctactataacactgaCCAGCGCCTCttcacacagctgtctgtgtctgcagacCTGGAGTCTCGCATCTGCATCgTGGGTGAGAACGGGGCGGGTAAATCCACCATGCTCAAGCTACTGATGGGAGAGTTAACGCCTGTCAACGGCATCAGACACGCCCATCGGAACCTGAAGATCGGTTATTTCAGTCAGCACCACGTGGATCAACTGGACCTCAACGTGTGTTCAATTGAGCTGCTACTCAACAAATTCCCAGGTCGTAACGAGGAGGAGTACAGACACCAGCTGGGCGGCTATGGAATAACAGGGGAGCTGGCAACTCGGCCTGTGGCCAGTTTGTCAGGAGGGCAGAAGAGCCGGGTTGCCTTCGCTCAGATGACAATGCCTTGccccAACTTCTATATCCTTGACGAGCCAACCAATCACCTGGACATGGAAACGATCGAGGCTCTAGCGAAGGCGCTCAACAAATTCAAAgGTGGAGTGGTCCTTGTCTCTCACGACGAGCGTCTGATCCGGCTCGtgtgcagagagctgtgggtctGTGAGCACGGGAACGTGCGGCGAGTGGAGGGGGGCTTCGACGAGTACCGGGATATCTTGCAAGAACAGTTCCGCAAGGAGGGCTACCTGTGAGTGGTAACTCACCCATTACGCCAACTATGACAGTCATGCCAAGTTGCCAATTGACTTCAATAAcctaaagccccccccccccccccactcttcaCTCTCTGACTGCCAATCATCATCCCCGGGGGGAGAACTGAGTTTAACTGTCCCGGCATCCTCTCTGCTCCCCCACACTaccgtttttgttttgtttgtgatTTAGTTCGGCCCGGCAGTTCAAAGTGGCATACTCTTGTCCATTGTCCTGAAGCAGACACGTTTTAGGGTACATGGAGGGTACAACATCTGTCCACGTGGAATGTCGATTGTGTGCGTACTCCGAAACTGCTCCGGCCTCGCCACTCCCAACCTTTCTGATCATAATAGTTGGAGCTGGTTTGGTTCACTTCAATATCAAGGAGGATTTTCCATCCTGTGAAGGTGGGGGGGCTGTACCCTCTAACTGTTAACCCCATGTGGGCAGCCATCTTGGAATAACGCTACATCCTTTTAGCTCTCATTAATATCAGTGAAGGGATGAATGTCTCCATTTCTTCATCCATGTTGAATATGTGTGCGATTGAGTGCGAGAGAGGATACATTTCAAGTGATATGGGATGATGTTTCTCCTGAACATGTGTGCTCGTGATGGAGAGGGATCATCTCTTAATCAGTGGAACCTGGGGCTGagctgaaatggcaccctgttccctacatagtacagtATTTTGGGAACAAGCCAAAAGTGCACCATAGCGTCATTTCAGACACCCCTGGTCGTGTTCAttgggcaccaaacagaagaaaacagtcTGAAACGGAGGGACTAAGTGGACTTGTTCAATAAGAAACGCTCCTTTTCTGTTCCAAATGTTTTCTGTTGCGTACCCTAATGAACACGATCCTGGAAACATCCATATGTGTTAGCATGGGAACCCACCAGCACAACAACAACTTGTACAACAGCAGCAGCTGGCTCCAGGTCTCTTGGGAAGAAGCAGCAGTATCTCCAAGTAAAGAGGggtattatattttatatatatatatatatatatatatatatatacacacatacatacacacacatacatacacacacatacatacacacacacacacacatcttaaaGACAATTATCAGAATAAAAAACGAAATTCCTTCTGCTTCAACGTTATATCACTAACTTATAAATAGCTGTTGAAAGAACTATTCAATCATAACGCCATGCTAAATAAAAAGCTTTAATCATCCATTC

Function

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475819 lncRNA upstream 58449 41862216 ~ 41866725 (+) True G1293261
TU1475771 lncRNA upstream 115002 41805689 ~ 41810172 (+) False G1293224
TU1475773 lncRNA upstream 115002 41805689 ~ 41810172 (+) True G1293224
TU1475766 lncRNA upstream 115830 41805689 ~ 41809344 (+) False G1293224
TU1475712 lncRNA upstream 175481 41740346 ~ 41749693 (+) True G1293174
TU1476180 lncRNA downstream 51546 42003378 ~ 42003587 (+) True G1293597
TU1476186 lncRNA downstream 57699 42009531 ~ 42050808 (+) True G1293603
TU1476212 lncRNA downstream 89281 42041113 ~ 42042556 (+) False G1293626
TU1476213 lncRNA downstream 89281 42041113 ~ 42042826 (+) True G1293626
TU1476224 lncRNA downstream 117828 42069660 ~ 42069949 (+) True G1293637
XM_021563226.2 mRNA upstream 89044 41810243 ~ 41836130 (+) False iqcg
XM_021563224.2 mRNA upstream 89044 41810256 ~ 41836130 (+) False iqcg
XM_021563223.2 mRNA upstream 89044 41810266 ~ 41836130 (+) True iqcg
XM_036945536.1 mRNA upstream 300134 41588463 ~ 41625040 (+) True LOC110490072
XM_021563215.2 mRNA upstream 337054 41583335 ~ 41588120 (+) True LOC110490073
XR_005036313.1 mRNA downstream 67644 42019476 ~ 42023326 (+) True LOC118938919
XM_036944383.1 mRNA downstream 88122 42039954 ~ 42054610 (+) False LOC110490085
XM_021563237.2 mRNA downstream 96767 42048599 ~ 42054610 (+) True LOC110490085
XM_021563239.2 mRNA downstream 202459 42154291 ~ 42255013 (+) False LOC110490086
XM_021563238.2 mRNA downstream 202460 42154292 ~ 42255013 (+) True LOC110490086
TU1475855 other upstream 15563 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 337030 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 337087 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 1794440 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1857267 40067558 ~ 40067907 (+) True G1291464
TU1476968 other downstream 813021 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1645092 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 1964346 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 2077604 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 2369671 44321503 ~ 44326179 (+) True cblb

Expression Profile