RNA id: XM_021563237.2


Basic Information

Item Value
RNA id XM_021563237.2
length 1368
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110490085
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42039954 ~ 42054610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACTccagcacacactccagcacacACAGTTGCACACCACGGAGCCCTGAAAACAAGTTTTCTAGATAGGCCAAATTGAACAATGCAAACTCAAGATGAAGAATCCTGCGAACCAGCACCACGGAACTGTCCCGGAGCATCATCAAGCGCACGATCGACAAGTTTGCCTAACACATCCATCCCAGGCAGAGTTAGAGAAGAGATGTGTGCATTTGTGTCCAGACATCGCGCCCAATAACCTAAATATTCCGATTTCTGGAAACGTTTCATCACGAGCGAAAACAGCTATGGCAGCCGTGGATGACAGGCATATGTGGGAGTGGGACCCATATGAAACATCGCAGAAAAGAGATTTTATTTATCGACCCAGTTCATCAACACCAGTTTTACCTCCTACAAAGACAAGAGCCCATAGAAACTCCTATGCACTAGCTTGTCCTGTGGGTGCCACTGTGTACAATGAGGACTTCTGTTGGAAGCCAGCCGCTAAACCTGACAGCATTCGCACAGGATCAGCCTCTGGGAACAGGAGGAACAACCCACATCCCAGTCAGTCATTCATGGTGTGGCGACTGCCCAAGGGCCAGAAGCAGAGCTCTGTAGGTGGTTGGTCCCCCTGGAAAAGTCCTCCTTCTGAGGAAGAGATCCGAAACGCTCTGACTGCCCAGTACCGGTCCACCTACCGGACTGACTACCTGGGCATGCCTCAAGGACTTCAGTTGATCCCCCCGATTCTCACTCCGCTGAACCACAAGCGCCAAGTCCCTCACTGCACGCACACAGAGATGAGGCACAACTACCGCCAGCCCAGAGAACGGTCTGAACTGCGGGGCAACATGTCGCGCTACGGCTGCAACGCACTGCACGGCGTTGCCCCCAGGGGTATAGTTCCTACTGTTGTTCATGGTCACATCCACAACCAGGAAAATAGTTCCCAGTTGACCACCTACGACAGACACTTTGGAGGGATAACGACCGATGTCTCGGCCGTGCTCCGCTCTCTACAACCCCAAGAGCTCCAGCAGTTCTGCAGACATCTACCTAACAAAGATAAAGAGGTTGTGCAGACATTTTTGCACCGAGTGCCCCCTACCAGCCAGGTGAAGAGAGGTACAAAGTCACCTGTCCTCCCTCCTGCGTTGTATAGGTCAGAGTGGATGTCTGGCTGGCCCGGGCCCCTGTGATACTTGACTTTCTGTAGCATCCCACCACAATCATGTGACAACCAGAGGCACTGTCCAGTCAACAAGTGCCTTTGTGGGactgtgtgtttgagtgtttaTGCTCTGTTTGTGAGTTTTATTTGCAGTGTTGTAACTGCCTTGACATTTCTGAAAATAAAGCCAATGAATCTAATGCAACGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1476213 lncRNA upstream 5773 42041113 ~ 42042826 (+) True G1293626
TU1476212 lncRNA upstream 6043 42041113 ~ 42042556 (+) False G1293626
TU1476180 lncRNA upstream 45012 42003378 ~ 42003587 (+) True G1293597
TU1475876 lncRNA upstream 100231 41947314 ~ 41948368 (+) False G1293315
TU1475875 lncRNA upstream 100231 41947514 ~ 41948368 (+) True G1293315
TU1476224 lncRNA downstream 15050 42069660 ~ 42069949 (+) True G1293637
TU1476358 lncRNA downstream 146820 42201430 ~ 42201903 (+) True G1293769
TU1476393 lncRNA downstream 202258 42256868 ~ 42257165 (+) True G1293798
TU1476576 lncRNA downstream 249687 42304297 ~ 42304553 (+) True G1293974
TU1476585 lncRNA downstream 266981 42321591 ~ 42323337 (+) True G1293979
XR_005036313.1 mRNA upstream 25273 42019476 ~ 42023326 (+) True LOC118938919
XM_021563229.2 mRNA upstream 96767 41925174 ~ 41951832 (+) True LOC110490081
XM_021563226.2 mRNA upstream 212469 41810243 ~ 41836130 (+) False iqcg
XM_021563239.2 mRNA downstream 99681 42154291 ~ 42255013 (+) False LOC110490086
XM_021563238.2 mRNA downstream 99682 42154292 ~ 42255013 (+) True LOC110490086
trnaa-ugc-68 mRNA downstream 267436 42322046 ~ 42322117 (+) True trnaa-ugc-68
trnat-ugu-37 mRNA downstream 268934 42323544 ~ 42323615 (+) True trnat-ugu-37
trnaa-ugc-69 mRNA downstream 269856 42324466 ~ 42324537 (+) True trnaa-ugc-69
TU1475855 other upstream 138988 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 460455 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 460512 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 1917865 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1980692 40067558 ~ 40067907 (+) True G1291464
TU1476968 other downstream 710243 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1542314 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 1861568 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 1974826 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 2266893 44321503 ~ 44326179 (+) True cblb

Expression Profile