RNA id: XM_021563256.2


Basic Information

Item Value
RNA id XM_021563256.2
length 2873
RNA type mRNA
GC content 0.44
exon number 4
gene id guca1d
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42737628 ~ 42759052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGGAACCACGGCTCTAACCTGGATGATATCCTGGCAGAGGATATGCACCACTGGTACAACAAGTTTATGAAGGAGTCTCCGTCAGGACTCATCACGCTGTTCGAACTCAAGGGCATGCTGGGTCTGCGGGGGATGAACGAGAACGCTACCAGCTACGTGGACCAAGTCTTCTTCACCTTCGACATGGACGGGGACGGGTACATAGATTTTGTAGAGTACATCGCAGCCATCAGCCTGATGCTGAAGGGAGAAATCAACCAGAAACTCAAGTGGTACTTCAAATTGTTTGACCAGGACGGCAACGGGAAAATCGACAAGGATGAGTTGGAGACAATATTCACGgcaatCCAGGACATCACGCGGAACCAGGATGTCACCCCAGAGGAGATTGTGTCGCTCATATTCGAGAAGATCGACATCAACGGAGAGGgtGAGCTGACCCTAGAGGAGTTCATTGAGGGGGCGAAGGGTCACGACGACATCATGGAGATGCTGAAGAAGATGATGGACCTCACGCCCGTACTCATCATCATCGTCCAAGGAATAGTAGTCTGAGAGAGGCCTGGCCAACCACTGCCGTAGCCACTATGTACACCTGCGCCCGGGGAGAGAGATGACAGAAAGACTTAAGTCCATTACAAACATTTACCCCACAAACTAATAATTGTGACATTTTCCCGCACAATGAACCTGAGGGAATGCGTTACCTTATGAAACAAGACTGTTGTTCCCAATGAGGCTTCTATGTCACACTGCCAGGtctgggggtggagacaatataGTCCGTACATAGTGGATCCTAGGAAGAGAAGCAGCTAACAGGGTTCCGAATAACTAATTAATAAATAGTCCCAGACTGCTGAAGACTGAGGCATCCAGTCCTATACTGCAGCCCACTAACCACCCACAGATGACGggatggatgaagggaggaagacaTTGAGAGACCCTTTTTCAACACCATCACAACAAACAAACTGAATGAAAGAGAACATTTAAAGGGACAGCTATGGAGAGCGGTACAGATACCATCTTCACATTCTACCTGTTTGTGTTTGCTCTCTGACCACTCAGCAAGATGAAGACTTggattctgagagagagagagaattctctATCATAAATCATCActatagggccaggagttttcctGACCATTTGACCGCGACAAGGAGATGCTTTGGGCTTTAATTATAGGCTATGTTCAGgagtcaggtcacatggtcaggtaAAGGTCTTGTGTCGAATCATCTCCTCTGTAGGTATGACCGTAAATAGGCACAGATAGAGACCCTAGGGGTTCTGAAGTGCCTGCCCTTTTCCCCTCCTTTCGATTGGTGGAATTACTTTGTTCTTTTTTCCCCAGCCCTATCCCCCTCTTGAGACACCAGGAGAGCGGAGAGCGTCATGTTGCCATTTTTAAAGTCACGCACCCTCCCCCCGTCCTTGACCTTTCCTTaataagtctatataacacagAATCGTATGAATTCTTCGGGGAATGAATACTACAGGTCAGAaactttccacagggatgttgttCATGCTGACGCGATGGCATCATGCAGTTGCTGTAGCTTGGACAGTGGTACACCACCACCTGCCTGTACCGTTGACATcaggcaggatgggtccatggactcatgctgcttacgccaagtCTTGGACTCCGGATTGGTCGGACCAGGCAGTGTTTTTCAACTCCTCGATTGTCCGGTGTTGGTGattgcgtgcccactggagccacttcttcttGCTGGTAGGaatggaacccggtgtggtcgtctgctgcaatagcccatttgtgaggaccgacgagttgtgcaTTAGCCTACAATGTGTGATGTGTTTTTGCTGAAAATGAAGGCCTATGCAAAACAATTAATAATGGTGAATTTGGCAAAAGGAGAAGTAGAACACTTTGAATTTAAAACCTGCTCCATCAAAGGTCTGTGCACGACCCTGATCACAAATCATGAATCTCTATTATCAATCTAGTCCCGTCTTTCAGGTCTTCGGTCTGTTATGTTTGCTCGGTGCACACAAGTCTCTATCATATCTATCTCTATCACTATCTACTAATCATAGTAGTCATCATTGGGATAGCTAGCAACATGACGGAAGTAAAAAATCAGAAGTAGGCTTTCAAGATCATATCATGATTTTCCAAACATTTTGGAGGCAAAGTAGACTACTACAGTGTATGATTTACATATGATGTGAAAGGTGTGACTACAGTGTGACTCTGTAGTTCATTACTTCCTGTATGTTTCTCAGTTATCTGTAATACCGTTTCCAGAGCCACTGTGGAAGGAACCAATAATTCCTTTcacaacaatttcacaacaatttcATTATGGGAATTCTAATGAATGCTGTAAGTATTGTTTAATTTGTCttacatatatttttatattctgAGAATGAGTGGGTATGTGCTGTATACTGACAAGAAGGCTAGAATGAAAGGCTtatgtttttatatattattatatgaaATCATATATTCATATATTATTATATGAAATCAGATTTTGATTTGTCAACTGACATCTGCAAAAGTACAACGGGTGAACAAaatgaatattcctttgagcatggtgatgttattaattacactttggatggcgtatcaatacacccagtcactacagagatacaggcgtcctttctaactcagttgacggagaggaaggaaaccactcagggatttcaccatgccaatggtgactttaaaacagcttGAGTTGAATGGCTTTGACAGGAGAAAatggaggatggatcaacaacattgtaattactcaacaacactgacctaaatgacagagtgaaaagaaggaagcttgtacagaatacaaatattgtttgca

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477012 lncRNA upstream 3024 42734291 ~ 42734604 (+) True G1294362
TU1476975 lncRNA upstream 53214 42683624 ~ 42684414 (+) True G1294325
TU1476986 lncRNA upstream 92398 42645014 ~ 42645230 (+) True G1294336
TU1476923 lncRNA upstream 168852 42557390 ~ 42568776 (+) False G1294276
TU1476924 lncRNA upstream 168852 42568362 ~ 42568776 (+) True G1294276
TU1476971 lncRNA downstream 10443 42769495 ~ 42770500 (+) True G1294322
TU1477134 lncRNA downstream 188483 42947535 ~ 42950110 (+) False G1294476
TU1477135 lncRNA downstream 188483 42947535 ~ 42950110 (+) True G1294476
TU1477224 lncRNA downstream 328415 43087467 ~ 43087808 (+) True G1294564
TU1477237 lncRNA downstream 339156 43098208 ~ 43098439 (+) True G1294576
XM_021563254.2 mRNA upstream 12011 42696715 ~ 42725617 (+) False alg8
XM_036944391.1 mRNA upstream 12011 42696715 ~ 42725617 (+) True alg8
XM_036944389.1 mRNA upstream 113400 42605307 ~ 42624228 (+) False ncbp3
XM_036944390.1 mRNA upstream 113400 42605311 ~ 42624228 (+) True ncbp3
XM_021563249.2 mRNA upstream 191654 42528504 ~ 42545974 (+) False tpst1l
trnaa-cgc-2 mRNA downstream 122707 42881759 ~ 42881830 (+) True trnaa-cgc-2
XM_036945538.1 mRNA downstream 375155 43134207 ~ 43156862 (+) True LOC118938889
XM_036944400.1 mRNA downstream 471503 43230555 ~ 43300367 (+) False slc13a2
XM_036944399.1 mRNA downstream 484853 43243905 ~ 43300368 (+) True slc13a2
trnas-gcu-9 mRNA downstream 575337 43334389 ~ 43334470 (+) True trnas-gcu-9
TU1475855 other upstream 828017 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1149484 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1149541 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 2606894 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 2669721 40067558 ~ 40067907 (+) True G1291464
TU1476968 other downstream 5801 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 837872 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 1157126 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 1270384 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 1562451 44321503 ~ 44326179 (+) True cblb

Expression Profile