RNA id: trnas-gcu-9


Basic Information

Item Value
RNA id trnas-gcu-9
length 82
RNA type mRNA
GC content 0.51
exon number 1
gene id trnas-gcu-9
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43334389 ~ 43334470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaggtggccgagtggttaaggcgatggactgctaatccattgtgctctgcatgcatggctttgaatcccatcctcatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477898 lncRNA upstream 3012 43331079 ~ 43331377 (+) True G1295178
TU1477896 lncRNA upstream 5442 43328626 ~ 43328947 (+) True G1295176
TU1477737 lncRNA upstream 15006 43279935 ~ 43319383 (+) True G1295025
TU1477735 lncRNA upstream 56750 43275609 ~ 43277639 (+) True G1295023
TU1477695 lncRNA upstream 101582 43225819 ~ 43232807 (+) True G1294992
TU1477906 lncRNA downstream 12606 43347076 ~ 43353630 (+) True G1295185
TU1477935 lncRNA downstream 92372 43426842 ~ 43457776 (+) True G1295208
TU1477907 lncRNA downstream 174631 43509101 ~ 43510454 (+) True trnas-gcu-157
TU1478031 lncRNA downstream 189348 43523818 ~ 43524059 (+) True G1295289
TU1478048 lncRNA downstream 206803 43541273 ~ 43541595 (+) True G1295306
XM_036944399.1 mRNA upstream 34021 43243905 ~ 43300368 (+) True slc13a2
XM_036944400.1 mRNA upstream 34022 43230555 ~ 43300367 (+) False slc13a2
XM_036945538.1 mRNA upstream 177527 43134207 ~ 43156862 (+) True LOC118938889
trnaa-cgc-2 mRNA upstream 452559 42881759 ~ 42881830 (+) True trnaa-cgc-2
XM_021563256.2 mRNA upstream 575337 42737628 ~ 42759052 (+) True guca1d
trnas-gcu-10 mRNA downstream 471 43334941 ~ 43335022 (+) True trnas-gcu-10
trnas-gcu-11 mRNA downstream 7049 43341519 ~ 43341600 (+) True trnas-gcu-11
trnas-gcu-12 mRNA downstream 7601 43342071 ~ 43342152 (+) True trnas-gcu-12
trnas-gcu-13 mRNA downstream 14182 43348652 ~ 43348733 (+) True trnas-gcu-13
trnas-gcu-14 mRNA downstream 14734 43349204 ~ 43349285 (+) True trnas-gcu-14
TU1476968 other upstream 566452 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1424778 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1746245 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1746302 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3203655 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 262454 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 581708 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 694966 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 987033 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1212709 44547179 ~ 44581048 (+) True G1296266

Expression Profile